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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
1IIK
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT TTR Y114C-DATA COLLECTED AT CRYO TEMPERATURE
Authors
:
T. Eneqvist, A. Olofsson, Y. Ando, E. Lundgren, A. E. Sauer-Eriksson
Date
:
23 Apr 01 (Deposition) - 15 Nov 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Greek Key, Beta Barrel, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Eneqvist, A. Olofsson, Y. Ando, T. Miyakawa, S. Katsuragi, J. Jass, E. Lundgren, A. E. Sauer-Eriksson
Disulfide-Bond Formation In The Transthyretin Mutant Y114C Prevents Amyloid Fibril Formation In Vivo And In Vitro
Biochemistry V. 41 13143 2002
[
close entry info
]
Hetero Components
(1, 6)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:87 , CYS A:114 , HOH A:959 , ARG B:21 , ALA B:120 , VAL B:122
BINDING SITE FOR RESIDUE BME A 901
2
AC2
SOFTWARE
HOH A:953 , PRO B:86 , PHE B:87 , PRO B:113 , CYS B:114
BINDING SITE FOR RESIDUE BME B 902
3
AC3
SOFTWARE
ALA A:108 , SER A:117 , THR A:118 , THR A:119 , BME A:904
BINDING SITE FOR RESIDUE BME A 903
4
AC4
SOFTWARE
ALA A:108 , SER A:117 , THR A:118 , THR A:119 , BME A:903
BINDING SITE FOR RESIDUE BME A 904
5
AC5
SOFTWARE
SER B:117 , THR B:118 , THR B:119 , BME B:906
BINDING SITE FOR RESIDUE BME B 905
6
AC6
SOFTWARE
SER B:117 , THR B:118 , THR B:119 , BME B:905
BINDING SITE FOR RESIDUE BME B 906
[
close Site info
]
SAPs(SNPs)/Variants
(86, 172)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_007547 (C10R, chain A/B, )
02: VAR_038959 (L12P, chain A/B, )
03: VAR_038960 (M13I, chain A/B, )
04: VAR_007548 (D18E, chain A/B, )
05: VAR_007549 (D18G, chain A/B, )
06: VAR_007550 (V20I, chain A/B, )
07: VAR_038961 (S23N, chain A/B, )
08: VAR_007551 (P24S, chain A/B, )
09: VAR_010658 (V28M, chain A/B, )
10: VAR_007552 (V30A, chain A/B, )
11: VAR_038962 (V30G, chain A/B, )
12: VAR_007553 (V30L, chain A/B, )
13: VAR_007554 (V30M, chain A/B, )
14: VAR_038963 (F33C, chain A/B, )
15: VAR_007555 (F33I, chain A/B, )
16: VAR_007556 (F33L, chain A/B, )
17: VAR_038964 (F33V, chain A/B, )
18: VAR_038965 (R34T, chain A/B, )
19: VAR_038966 (K35N, chain A/B, )
20: VAR_007557 (A36P, chain A/B, )
21: VAR_038967 (D38A, chain A/B, )
22: VAR_038968 (D38V, chain A/B, )
23: VAR_038969 (W41L, chain A/B, )
24: VAR_038970 (E42D, chain A/B, )
25: VAR_007558 (E42G, chain A/B, )
26: VAR_038971 (F44S, chain A/B, )
27: VAR_007559 (A45D, chain A/B, )
28: VAR_038972 (A45S, chain A/B, )
29: VAR_007560 (A45T, chain A/B, )
30: VAR_007561 (G47A, chain A/B, )
31: VAR_038973 (G47E, chain A/B, )
32: VAR_007562 (G47R, chain A/B, )
33: VAR_007563 (G47V, chain A/B, )
34: VAR_007564 (T49A, chain A/B, )
35: VAR_038974 (T49I, chain A/B, )
36: VAR_007565 (S50I, chain A/B, )
37: VAR_007566 (S50R, chain A/B, )
38: VAR_007567 (S52P, chain A/B, )
39: VAR_038975 (G53E, chain A/B, )
40: VAR_007568 (E54G, chain A/B, )
41: VAR_038976 (E54K, chain A/B, )
42: VAR_007569 (L55P, chain A/B, )
43: VAR_038977 (L55Q, chain A/B, )
44: VAR_007570 (L58H, chain A/B, )
45: VAR_007571 (L58R, chain A/B, )
46: VAR_007572 (T59K, chain A/B, )
47: VAR_007573 (T60A, chain A/B, )
48: VAR_038978 (E61G, chain A/B, )
49: VAR_007574 (E61K, chain A/B, )
50: VAR_007575 (F64L, chain A/B, )
51: VAR_007576 (I68L, chain A/B, )
52: VAR_007577 (Y69H, chain A/B, )
53: VAR_007578 (K70N, chain A/B, )
54: VAR_007579 (V71A, chain A/B, )
55: VAR_007580 (I73V, chain A/B, )
56: VAR_007581 (D74H, chain A/B, )
57: VAR_007582 (S77Y, chain A/B, )
58: VAR_038979 (Y78F, chain A/B, )
59: VAR_007583 (I84N, chain A/B, )
60: VAR_007584 (I84S, chain A/B, )
61: VAR_038980 (I84T, chain A/B, )
62: VAR_010659 (E89K, chain A/B, )
63: VAR_007585 (E89Q, chain A/B, )
64: VAR_007586 (H90N, chain A/B, )
65: VAR_007587 (A91S, chain A/B, )
66: VAR_038981 (V94A, chain A/B, )
67: VAR_007588 (A97G, chain A/B, )
68: VAR_038982 (A97S, chain A/B, )
69: VAR_007589 (G101S, chain A/B, )
70: VAR_007590 (P102R, chain A/B, )
71: VAR_007591 (R104C, chain A/B, )
72: VAR_038983 (R104H, chain A/B, )
73: VAR_038984 (T106N, chain A/B, )
74: VAR_038985 (I107M, chain A/B, )
75: VAR_007592 (I107V, chain A/B, )
76: VAR_007593 (A109T, chain A/B, )
77: VAR_007594 (L111M, chain A/B, )
78: VAR_007595 (C114C, chain A/B, )
79: VAR_007598 (C114H, chain A/B, )
80: VAR_007596 (Y116S, chain A/B, )
81: VAR_007597 (Y116V, chain A/B, )
82: VAR_007599 (T119M, chain A/B, )
83: VAR_038986 (A120S, chain A/B, )
84: VAR_038987 (V122A, chain A/B, )
85: VAR_007600 (V122I, chain A/B, )
86: VAR_038988 (N124S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007547
C
30
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
C
10
R
02
UniProt
VAR_038959
L
32
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
12
P
03
UniProt
VAR_038960
M
33
I
TTHY_HUMAN
Polymorphism
---
A/B
M
13
I
04
UniProt
VAR_007548
D
38
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
D
18
E
05
UniProt
VAR_007549
D
38
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
D
18
G
06
UniProt
VAR_007550
V
40
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
20
I
07
UniProt
VAR_038961
S
43
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
S
23
N
08
UniProt
VAR_007551
P
44
S
TTHY_HUMAN
Disease (AMYL-TTR)
11541790
A/B
P
24
S
09
UniProt
VAR_010658
V
48
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
28
M
10
UniProt
VAR_007552
V
50
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
30
A
11
UniProt
VAR_038962
V
50
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
30
G
12
UniProt
VAR_007553
V
50
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
30
L
13
UniProt
VAR_007554
V
50
M
TTHY_HUMAN
Disease (AMYL-TTR)
28933979
A/B
V
30
M
14
UniProt
VAR_038963
F
53
C
TTHY_HUMAN
Unclassified
---
A/B
F
33
C
15
UniProt
VAR_007555
F
53
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
F
33
I
16
UniProt
VAR_007556
F
53
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
F
33
L
17
UniProt
VAR_038964
F
53
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
F
33
V
18
UniProt
VAR_038965
R
54
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
R
34
T
19
UniProt
VAR_038966
K
55
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
K
35
N
20
UniProt
VAR_007557
A
56
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
36
P
21
UniProt
VAR_038967
D
58
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
D
38
A
22
UniProt
VAR_038968
D
58
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
D
38
V
23
UniProt
VAR_038969
W
61
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
W
41
L
24
UniProt
VAR_038970
E
62
D
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
A/B
E
42
D
25
UniProt
VAR_007558
E
62
G
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
A/B
E
42
G
26
UniProt
VAR_038971
F
64
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
F
44
S
27
UniProt
VAR_007559
A
65
D
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
45
D
28
UniProt
VAR_038972
A
65
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
45
S
29
UniProt
VAR_007560
A
65
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
45
T
30
UniProt
VAR_007561
G
67
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
G
47
A
31
UniProt
VAR_038973
G
67
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
G
47
E
32
UniProt
VAR_007562
G
67
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
G
47
R
33
UniProt
VAR_007563
G
67
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
G
47
V
34
UniProt
VAR_007564
T
69
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
T
49
A
35
UniProt
VAR_038974
T
69
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
T
49
I
36
UniProt
VAR_007565
S
70
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
S
50
I
37
UniProt
VAR_007566
S
70
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
S
50
R
38
UniProt
VAR_007567
S
72
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
S
52
P
39
UniProt
VAR_038975
G
73
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
G
53
E
40
UniProt
VAR_007568
E
74
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
54
G
41
UniProt
VAR_038976
E
74
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
54
K
42
UniProt
VAR_007569
L
75
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
55
P
43
UniProt
VAR_038977
L
75
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
55
Q
44
UniProt
VAR_007570
L
78
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
58
H
45
UniProt
VAR_007571
L
78
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
58
R
46
UniProt
VAR_007572
T
79
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
T
59
K
47
UniProt
VAR_007573
T
80
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
T
60
A
48
UniProt
VAR_038978
E
81
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
61
G
49
UniProt
VAR_007574
E
81
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
61
K
50
UniProt
VAR_007575
F
84
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
F
64
L
51
UniProt
VAR_007576
I
88
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
68
L
52
UniProt
VAR_007577
Y
89
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
Y
69
H
53
UniProt
VAR_007578
K
90
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
K
70
N
54
UniProt
VAR_007579
V
91
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
71
A
55
UniProt
VAR_007580
I
93
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
73
V
56
UniProt
VAR_007581
D
94
H
TTHY_HUMAN
Polymorphism
---
A/B
D
74
H
57
UniProt
VAR_007582
S
97
Y
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
S
77
Y
58
UniProt
VAR_038979
Y
98
F
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
Y
78
F
59
UniProt
VAR_007583
I
104
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
84
N
60
UniProt
VAR_007584
I
104
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
84
S
61
UniProt
VAR_038980
I
104
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
84
T
62
UniProt
VAR_010659
E
109
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
89
K
63
UniProt
VAR_007585
E
109
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
E
89
Q
64
UniProt
VAR_007586
H
110
N
TTHY_HUMAN
Polymorphism
---
A/B
H
90
N
65
UniProt
VAR_007587
A
111
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
91
S
66
UniProt
VAR_038981
V
114
A
TTHY_HUMAN
Unclassified
---
A/B
V
94
A
67
UniProt
VAR_007588
A
117
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
97
G
68
UniProt
VAR_038982
A
117
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
97
S
69
UniProt
VAR_007589
G
121
S
TTHY_HUMAN
Polymorphism
---
A/B
G
101
S
70
UniProt
VAR_007590
P
122
R
TTHY_HUMAN
Polymorphism
---
A/B
P
102
R
71
UniProt
VAR_007591
R
124
C
TTHY_HUMAN
Polymorphism
---
A/B
R
104
C
72
UniProt
VAR_038983
R
124
H
TTHY_HUMAN
Polymorphism
121918095
A/B
R
104
H
73
UniProt
VAR_038984
T
126
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
T
106
N
74
UniProt
VAR_038985
I
127
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
107
M
75
UniProt
VAR_007592
I
127
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
I
107
V
76
UniProt
VAR_007593
A
129
T
TTHY_HUMAN
Disease (DTTRH)
---
A/B
A
109
T
77
UniProt
VAR_007594
L
131
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
L
111
M
78
UniProt
VAR_007595
Y
134
C
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
C
114
C
79
UniProt
VAR_007598
Y
134
H
TTHY_HUMAN
Disease (CTS1)
---
A/B
C
114
H
80
UniProt
VAR_007596
Y
136
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
Y
116
S
81
UniProt
VAR_007597
Y
136
V
TTHY_HUMAN
Unclassified
---
A/B
Y
116
V
82
UniProt
VAR_007599
T
139
M
TTHY_HUMAN
Polymorphism
28933981
A/B
T
119
M
83
UniProt
VAR_038986
A
140
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
A
120
S
84
UniProt
VAR_038987
V
142
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
V
122
A
85
UniProt
VAR_007600
V
142
I
TTHY_HUMAN
Disease (AMYL-TTR)
28933980
A/B
V
122
I
86
UniProt
VAR_038988
N
144
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B
N
124
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TRANSTHYRETIN_1 (A:15-30,B:15-30)
2: TRANSTHYRETIN_2 (A:105-117,B:105-117)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSTHYRETIN_1
PS00768
Transthyretin signature 1.
TTHY_HUMAN
35-50
2
A:15-30
B:15-30
2
TRANSTHYRETIN_2
PS00769
Transthyretin signature 2.
TTHY_HUMAN
125-137
2
A:105-117
B:105-117
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Exons
(3, 6)
Info
All Exons
Exon 1.2 (A:10-47 | B:10-47)
Exon 1.3a (A:47-92 | B:47-92)
Exon 1.8a (A:93-125 | B:93-124)
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1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3a
3: Boundary 1.3a/1.8a
4: Boundary 1.8a/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000237014
1a
ENSE00001836564
chr18:
29171689-29171934
246
TTHY_HUMAN
1-23
23
0
-
-
1.2
ENST00000237014
2
ENSE00000796938
chr18:
29172859-29172989
131
TTHY_HUMAN
24-67
44
2
A:10-47
B:10-47
38
38
1.3a
ENST00000237014
3a
ENSE00000796939
chr18:
29175083-29175218
136
TTHY_HUMAN
67-112
46
2
A:47-92
B:47-92
46
46
1.8a
ENST00000237014
8a
ENSE00001827041
chr18:
29178531-29178974
444
TTHY_HUMAN
113-147
35
2
A:93-125
B:93-124
33
32
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1iika_ (A:)
1b: SCOP_d1iikb_ (B:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Transthyretin (synonym: prealbumin)
(211)
Family
:
Transthyretin (synonym: prealbumin)
(198)
Protein domain
:
Transthyretin (synonym: prealbumin)
(194)
Human (Homo sapiens) [TaxId: 9606]
(184)
1a
d1iika_
A:
1b
d1iikb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1iikA00 (A:10-125)
1b: CATH_1iikB00 (B:10-124)
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.180, no name defined]
(150)
Human (Homo sapiens)
(131)
1a
1iikA00
A:10-125
1b
1iikB00
B:10-124
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Pfam Domains
(0, 0)
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