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1IGY
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (235 KB)
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(1)
Title
:
STRUCTURE OF IMMUNOGLOBULIN
Authors
:
L. J. Harris, A. Mcpherson
Date
:
09 Oct 97 (Deposition) - 15 Apr 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Intact Immunoglobulin, V Region, C Region, Hinge Region, Immunoglobulin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Harris, E. Skaletsky, A. Mcpherson
Crystallographic Structure Of An Intact Igg1 Monoclonal Antibody.
J. Mol. Biol. V. 275 861 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(7, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL B:277 , ASP B:278 , PHE B:313 , ASN B:314 , THR B:318 , NDG B:477
BINDING SITE FOR RESIDUE NAG B 475
02
AC2
SOFTWARE
PHE B:254 , VAL B:277 , ARG B:320 , NAG B:475 , BMA B:478 , MAN B:479
BINDING SITE FOR RESIDUE NDG B 477
03
AC3
SOFTWARE
NDG B:477 , MAN B:479 , MAN B:482
BINDING SITE FOR RESIDUE BMA B 478
04
AC4
SOFTWARE
NDG B:477 , BMA B:478 , NAG B:480
BINDING SITE FOR RESIDUE MAN B 479
05
AC5
SOFTWARE
PHE B:256 , ARG B:320 , MAN B:479 , GAL B:481
BINDING SITE FOR RESIDUE NAG B 480
06
AC6
SOFTWARE
PHE B:256 , PRO B:257 , LYS B:271 , THR B:273 , NAG B:480
BINDING SITE FOR RESIDUE GAL B 481
07
AC7
SOFTWARE
BMA B:478
BINDING SITE FOR RESIDUE MAN B 482
08
AC8
SOFTWARE
VAL D:277 , ASP D:278 , PHE D:313 , ASN D:314 , THR D:318 , FUC D:476 , NDG D:477
BINDING SITE FOR RESIDUE NAG D 475
09
AC9
SOFTWARE
ILE B:241 , NAG D:475 , NDG D:477
BINDING SITE FOR RESIDUE FUC D 476
10
BC1
SOFTWARE
VAL D:277 , ARG D:320 , NAG D:475 , FUC D:476 , BMA D:478 , MAN D:479
BINDING SITE FOR RESIDUE NDG D 477
11
BC2
SOFTWARE
NDG D:477 , MAN D:479 , MAN D:482
BINDING SITE FOR RESIDUE BMA D 478
12
BC3
SOFTWARE
NDG D:477 , BMA D:478 , NAG D:480
BINDING SITE FOR RESIDUE MAN D 479
13
BC4
SOFTWARE
PHE D:256 , ARG D:320 , MAN D:479 , GAL D:481
BINDING SITE FOR RESIDUE NAG D 480
14
BC5
SOFTWARE
PHE D:256 , PRO D:257 , LYS D:271 , THR D:273 , NAG D:480
BINDING SITE FOR RESIDUE GAL D 481
15
BC6
SOFTWARE
BMA D:478
BINDING SITE FOR RESIDUE MAN D 482
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:192-198,C:192-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
2
A:192-198
C:192-198
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 12)
Info
All SCOP Domains
1a: SCOP_d1igyb2 (B:114-235)
1b: SCOP_d1igyd2 (D:114-235)
2a: SCOP_d1igyb3 (B:236-361)
2b: SCOP_d1igyd3 (D:236-361)
3a: SCOP_d1igyb4 (B:363-474)
3b: SCOP_d1igyd4 (D:363-474)
4a: SCOP_d1igya2 (A:108-214)
4b: SCOP_d1igyc2 (C:108-214)
5a: SCOP_d1igyb1 (B:2-113)
5b: SCOP_d1igyd1 (D:2-113)
6a: SCOP_d1igya1 (A:2-107)
6b: SCOP_d1igyc1 (C:2-107)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1igyb2
B:114-235
1b
d1igyd2
D:114-235
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Mouse (Mus musculus) [TaxId: 10090]
(1)
2a
d1igyb3
B:236-361
2b
d1igyd3
D:236-361
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Mouse (Mus musculus) [TaxId: 10090]
(2)
3a
d1igyb4
B:363-474
3b
d1igyd4
D:363-474
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
4a
d1igya2
A:108-214
4b
d1igyc2
C:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
5a
d1igyb1
B:2-113
5b
d1igyd1
D:2-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
6a
d1igya1
A:2-107
6b
d1igyc1
C:2-107
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1igyA02 (A:109-211)
1b: CATH_1igyA01 (A:2-108)
1c: CATH_1igyC01 (C:2-108)
1d: CATH_1igyB02 (B:114-239)
1e: CATH_1igyD02 (D:114-239)
1f: CATH_1igyD04 (D:358-474)
1g: CATH_1igyB04 (B:361-474)
1h: CATH_1igyD03 (D:240-357)
1i: CATH_1igyB03 (B:240-360)
1j: CATH_1igyC02 (C:109-211)
1k: CATH_1igyB01 (B:2-113)
1l: CATH_1igyD01 (D:2-113)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1igyA02
A:109-211
1b
1igyA01
A:2-108
1c
1igyC01
C:2-108
1d
1igyB02
B:114-239
1e
1igyD02
D:114-239
1f
1igyD04
D:358-474
1g
1igyB04
B:361-474
1h
1igyD03
D:240-357
1i
1igyB03
B:240-360
1j
1igyC02
C:109-211
1k
1igyB01
B:2-113
1l
1igyD01
D:2-113
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Sidechain
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
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