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1IGT
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (259 KB)
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(1)
Title
:
STRUCTURE OF IMMUNOGLOBULIN
Authors
:
L. J. Harris, S. B. Larson, K. W. Hasel, A. Mcpherson
Date
:
25 Oct 96 (Deposition) - 07 Jul 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Intact Immunoglobulin V Region C Region, Immunoglobulin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Harris, S. B. Larson, K. W. Hasel, A. Mcpherson
Refined Structure Of An Intact Igg2A Monoclonal Antibody.
Biochemistry V. 36 1581 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:278 , TYR B:313 , ASN B:314 , FUL B:476 , NAG B:477
BINDING SITE FOR RESIDUE NAG B 475
02
AC2
SOFTWARE
TYR B:313 , NAG B:475
BINDING SITE FOR RESIDUE FUL B 476
03
AC3
SOFTWARE
NAG B:475 , BMA B:478 , MAN B:479
BINDING SITE FOR RESIDUE NAG B 477
04
AC4
SOFTWARE
PHE B:254 , NAG B:477 , MAN B:479 , MAN B:482
BINDING SITE FOR RESIDUE BMA B 478
05
AC5
SOFTWARE
NAG B:477 , BMA B:478 , NAG B:480
BINDING SITE FOR RESIDUE MAN B 479
06
AC6
SOFTWARE
LYS B:259 , THR B:273 , VAL B:275 , MAN B:479 , GAL B:481
BINDING SITE FOR RESIDUE NAG B 480
07
AC7
SOFTWARE
PRO B:257 , LYS B:259 , ASP B:262 , ILE B:271 , THR B:273 , NAG B:480
BINDING SITE FOR RESIDUE GAL B 481
08
AC8
SOFTWARE
BMA B:478 , NAG B:483
BINDING SITE FOR RESIDUE MAN B 482
09
AC9
SOFTWARE
ARG B:353 , MAN B:482
BINDING SITE FOR RESIDUE NAG B 483
10
BC1
SOFTWARE
TYR D:313 , ASN D:314 , FUC D:476 , NAG D:477
BINDING SITE FOR RESIDUE NAG D 475
11
BC2
SOFTWARE
TYR D:313 , NAG D:475
BINDING SITE FOR RESIDUE FUC D 476
12
BC3
SOFTWARE
NAG D:475 , BMA D:478 , MAN D:479
BINDING SITE FOR RESIDUE NAG D 477
13
BC4
SOFTWARE
PHE D:256 , NAG D:477 , MAN D:479 , MAN D:482
BINDING SITE FOR RESIDUE BMA D 478
14
BC5
SOFTWARE
NAG D:477 , BMA D:478 , NAG D:480
BINDING SITE FOR RESIDUE MAN D 479
15
BC6
SOFTWARE
LYS D:259 , MAN D:479 , GAL D:481
BINDING SITE FOR RESIDUE NAG D 480
16
BC7
SOFTWARE
ASP D:262 , ILE D:271 , THR D:273 , NAG D:480
BINDING SITE FOR RESIDUE GAL D 481
17
BC8
SOFTWARE
BMA D:478 , NAG D:483
BINDING SITE FOR RESIDUE MAN D 482
18
BC9
SOFTWARE
ARG D:353 , MAN D:482
BINDING SITE FOR RESIDUE NAG D 483
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:454-460,D:454-460)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
GCAA_MOUSE
306-312
2
B:454-460
D:454-460
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 12)
Info
All SCOP Domains
1a: SCOP_d1igtb2 (B:115-235)
1b: SCOP_d1igtd2 (D:115-235)
2a: SCOP_d1igtb3 (B:236-361)
2b: SCOP_d1igtd3 (D:236-361)
3a: SCOP_d1igtb4 (B:363-474)
3b: SCOP_d1igtd4 (D:363-474)
4a: SCOP_d1igta2 (A:109-214)
4b: SCOP_d1igtc2 (C:109-214)
5a: SCOP_d1igtb1 (B:1-114)
5b: SCOP_d1igtd1 (D:1-114)
6a: SCOP_d1igta1 (A:1-108)
6b: SCOP_d1igtc1 (C:1-108)
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)
(
)
Folds
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)
(
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Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1igtb2
B:115-235
1b
d1igtd2
D:115-235
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Mouse (Mus musculus), gamma2 [TaxId: 10090]
(1)
2a
d1igtb3
B:236-361
2b
d1igtd3
D:236-361
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Mouse (Mus musculus), gamma2 [TaxId: 10090]
(1)
3a
d1igtb4
B:363-474
3b
d1igtd4
D:363-474
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
4a
d1igta2
A:109-214
4b
d1igtc2
C:109-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
(58)
5a
d1igtb1
B:1-114
5b
d1igtd1
D:1-114
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
6a
d1igta1
A:1-108
6b
d1igtc1
C:1-108
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1igtA02 (A:109-211)
1b: CATH_1igtB02 (B:115-236)
1c: CATH_1igtD02 (D:115-236)
1d: CATH_1igtB04 (B:361-474)
1e: CATH_1igtD04 (D:361-474)
1f: CATH_1igtB03 (B:250-360)
1g: CATH_1igtD03 (D:250-360)
1h: CATH_1igtB01 (B:1-114)
1i: CATH_1igtD01 (D:1-114)
1j: CATH_1igtC02 (C:109-211)
1k: CATH_1igtA01 (A:1-108)
1l: CATH_1igtC01 (C:1-108)
View:
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
1a
1igtA02
A:109-211
1b
1igtB02
B:115-236
1c
1igtD02
D:115-236
1d
1igtB04
B:361-474
1e
1igtD04
D:361-474
1f
1igtB03
B:250-360
1g
1igtD03
D:250-360
1h
1igtB01
B:1-114
1i
1igtD01
D:1-114
1j
1igtC02
C:109-211
1k
1igtA01
A:1-108
1l
1igtC01
C:1-108
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
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Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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