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1IG4
Asym. Unit
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Asym.Unit (662 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF HUMAN MBD1 IN COMPLEX WITH METHYLATED DNA
Authors
:
I. Ohki, N. Shimotake, N. Fujita, J. -G. Jee, T. Ikegami, M. Nakao, M. Shirakawa
Date
:
17 Apr 01 (Deposition) - 30 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C (20 x)
Keywords
:
Protein-Dna Complex, Alpha-Beta, Double Helix, Recognition Via Beta-Sheet, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Ohki, N. Shimotake, N. Fujita, J. Jee, T. Ikegami, M. Nakao, M. Shirakawa
Solution Structure Of The Methyl-Cpg Binding Domain Of Human Mbd1 In Complex With Methylated Dna.
Cell(Cambridge, Mass. ) V. 105 487 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONO... (5CMa)
1b: 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONO... (5CMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5CM
2
Mod. Nucleotide
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MBD (A:1-69)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBD
PS50982
Methyl-CpG-binding domain (MBD) profile.
MBD1_HUMAN
1-69
1
A:1-69
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Exons
(2, 2)
Info
All Exons
Exon 1.3a (A:1-37)
Exon 1.4 (A:37-75)
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All Exon Boundaries
1: Boundary 1.1a/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000382948
1a
ENSE00001211676
chr18:
47808144-47807733
412
MBD1_HUMAN
-
0
0
-
-
1.3a
ENST00000382948
3a
ENSE00001682699
chr18:
47806387-47806253
135
MBD1_HUMAN
1-37
37
1
A:1-37
37
1.4
ENST00000382948
4
ENSE00000950204
chr18:
47803574-47803460
115
MBD1_HUMAN
37-75
39
1
A:37-75
39
1.5
ENST00000382948
5
ENSE00000950205
chr18:
47803368-47803202
167
MBD1_HUMAN
76-131
56
0
-
-
1.6
ENST00000382948
6
ENSE00000950206
chr18:
47803114-47803032
83
MBD1_HUMAN
131-159
29
0
-
-
1.7
ENST00000382948
7
ENSE00000950207
chr18:
47802788-47802748
41
MBD1_HUMAN
159-172
14
0
-
-
1.8
ENST00000382948
8
ENSE00000950219
chr18:
47802351-47802205
147
MBD1_HUMAN
173-221
49
0
-
-
1.9
ENST00000382948
9
ENSE00000950208
chr18:
47802098-47801970
129
MBD1_HUMAN
222-264
43
0
-
-
1.11
ENST00000382948
11
ENSE00000950209
chr18:
47801615-47801499
117
MBD1_HUMAN
265-303
39
0
-
-
1.12
ENST00000382948
12
ENSE00000950210
chr18:
47801415-47801347
69
MBD1_HUMAN
304-326
23
0
-
-
1.14
ENST00000382948
14
ENSE00000950212
chr18:
47800233-47799934
300
MBD1_HUMAN
327-426
100
0
-
-
1.16b
ENST00000382948
16b
ENSE00000950214
chr18:
47799325-47799194
132
MBD1_HUMAN
427-470
44
0
-
-
1.17
ENST00000382948
17
ENSE00001640699
chr18:
47799108-47799047
62
MBD1_HUMAN
471-491
21
0
-
-
1.20c
ENST00000382948
20c
ENSE00001724709
chr18:
47796181-47796046
136
MBD1_HUMAN
491-535
45
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ig4a_ (A:)
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)
(
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA-binding domain
(16)
Superfamily
:
DNA-binding domain
(16)
Family
:
Methyl-CpG-binding domain, MBD
(4)
Protein domain
:
Methylation-dependent transcriptional repressor MBD1/PCM1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ig4a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ig4A00 (A:1-75)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Methyl-cpg-binding Protein 2; Chain A
(5)
Homologous Superfamily
:
Methyl-cpg-binding Protein 2; Chain A
(5)
Human (Homo sapiens)
(4)
1a
1ig4A00
A:1-75
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Pfam Domains
(0, 0)
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