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Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YEAST THIAMIN PYROPHOSPHOKINASE
Authors
:
L. -J. Baker, J. A. Dorocke, R. A. Harris, D. E. Timm
Date
:
16 Apr 01 (Deposition) - 20 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Substrate Complex, Compound Active Site, Alpha-Beta- Alpha, Beta Sandwich, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Baker, J. A. Dorocke, R. A. Harris, D. E. Timm
The Crystal Structure Of Yeast Thiamin Pyrophosphokinase.
Structure V. 9 539 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YL... (VIBa)
1b: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YL... (VIBb)
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No.
Name
Count
Type
Full Name
1
VIB
2
Ligand/Ion
3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:270 , VAL A:272 , SER A:285 , SER A:286 , SER A:287 , ASN A:288 , GLN B:122 , TYR B:123 , SER B:124 , THR B:125 , HOH B:805 , HOH B:971
BINDING SITE FOR RESIDUE VIB B 701
2
AC2
SOFTWARE
GLN A:122 , TYR A:123 , SER A:124 , THR A:125 , HOH A:784 , HOH A:1011 , TRP B:270 , VAL B:272 , SER B:285 , SER B:286 , SER B:287 , ASN B:288
BINDING SITE FOR RESIDUE VIB A 702
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(1, 2)
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All Exons
Exon 1.1 (A:3-319 | B:1-319)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YOR143C
1
YOR143C.1
XV:602343-601384
960
THI80_YEAST
1-319
319
2
A:3-319
B:1-319
317
319
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ig0a1 (A:224-319)
1b: SCOP_d1ig0b1 (B:224-319)
2a: SCOP_d1ig0a2 (A:3-223)
2b: SCOP_d1ig0b2 (B:1-223)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Family
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Protein domain
:
Thiamin pyrophosphokinase, substrate-binding domain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d1ig0a1
A:224-319
1b
d1ig0b1
B:224-319
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Superfamily
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Family
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Protein domain
:
Thiamin pyrophosphokinase, catalytic domain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d1ig0a2
A:3-223
2b
d1ig0b2
B:1-223
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ig0A01 (A:37-223)
1b: CATH_1ig0B01 (B:37-223)
2a: CATH_1ig0A02 (A:3-36,A:224-319)
2b: CATH_1ig0B02 (B:3-36,B:224-319)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Thiamin pyrophosphokinase, domain 1
(5)
Baker's yeast (Saccharomyces cerevisiae)
(1)
1a
1ig0A01
A:37-223
1b
1ig0B01
B:37-223
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.320, no name defined]
(3)
Baker's yeast (Saccharomyces cerevisiae)
(1)
2a
1ig0A02
A:3-36,A:224-319
2b
1ig0B02
B:3-36,B:224-319
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Pfam Domains
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