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1IES
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (689 KB)
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(1)
Title
:
TETRAGONAL CRYSTAL STRUCTURE OF NATIVE HORSE SPLEEN FERRITIN
Authors
:
T. Granier, B. Gallois, A. Dautant, B. Langlois D'Estaintot, G. Preci
Date
:
28 May 96 (Deposition) - 11 Jan 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Apoferritin, Iron Storage
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Granier, B. Gallois, A. Dautant, B. Langlois D'Estaintot, G. Precigoux
Comparison Of The Structures Of The Cubic And Tetragonal Forms Of Horse-Spleen Apoferritin.
Acta Crystallogr. , Sect. D V. 53 580 1997
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
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Sites
(9, 9)
Info
All Sites
1: 1 (UNKNOWN)
2: 1' (UNKNOWN)
3: 2 (UNKNOWN)
4: 2' (UNKNOWN)
5: 3 (UNKNOWN)
6: AC1 (SOFTWARE)
7: AC2 (SOFTWARE)
8: AC3 (SOFTWARE)
9: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
1
UNKNOWN
CD A:201
METAL-BINDING SITE. SITE 1 IS EXPOSED TO THE EXTERIOR OF THE PROTEIN SHELL. CD 201 IS LOCATED ON THE 3-FOLD AXES OF THE MOLECULE WHICH ARE PRESUMED TO BE THE IRON ENTRY ROUTE TO THE INTERIOR OF THE PROTEIN. THIS CADMIUM ATOM HAS BEEN ASSIGNED LOW SITE OCCUPATION FACTOR, AS COMPARED TO THOSE FOUND IN THE NATIVE CUBIC STRUCTURE (ENTRY CODE 1IER) BUT CLEARLY CANNOT BE CONFUSED WITH SOLVENT MOLECULE.
2
1'
UNKNOWN
CD D:203
METAL-BINDING SITE. SITE 1' IS EXPOSED T THE EXTERIOR OF THE PROTEIN SHELL. CD 203 IS LOCATED ON THE 3-FOLD AXES OF THE MOLECULE WHICH ARE PRESUMED TO BE THE IRON ENTRY ROUTE TO THE INTERIOR OF THE PROTEIN. THIS CADMIUM ATOM HAS BEEN ASSIGNED LOW SITE OCCUPATION FACTOR, AS COMPARED TO THOSE FOUND IN THE NATIVE CUBIC STRUCTURE (ENTRY CODE 1IER) BUT CLEARLY CANNOT BE CONFUSED WITH SOLVENT MOLECULE.
3
2
UNKNOWN
CD B:202
METAL SITE. SITE 2 IS LOCATED NEAR THE INNER SURFACE OF THE PROTEIN SHELL. CD 202 IS LOCATED ON THE 3-FOLD AXES OF THE MOLECULE WHICH ARE PRESUMED TO BE THE IRON ENTRY ROUTE TO THE INTERIOR OF THE PROTEIN. THIS CADMIUM ATOM HAS BEEN ASSIGNED LOW SITE OCCUPATION FACTOR, AS COMPARED TO THOSE FOUND IN THE NATIVE CUBIC STRUCTURE (ENTRY CODE 1IER) BUT CLEARLY CANNOT BE CONFUSED WITH SOLVENT MOLECULE.
4
2'
UNKNOWN
CD D:204
METAL SITE. SITE 2' IS LOCATED NEAR THE INNER SURFACE OF THE PROTEIN SHELL. CD 204 IS LOCATED ON THE 3-FOLD AXES OF THE MOLECULE WHICH ARE PRESUMED TO BE THE IRON ENTRY ROUTE TO THE INTERIOR OF THE PROTEIN. THIS CADMIUM ATOM HAS BEEN ASSIGNED LOW SITE OCCUPATION FACTOR, AS COMPARED TO THOSE FOUND IN THE NATIVE CUBIC STRUCTURE (ENTRY CODE 1IER) BUT CLEARLY CANNOT BE CONFUSED WITH SOLVENT MOLECULE.
5
3
UNKNOWN
CD B:205
METAL-BINDING SITE CD 205 IS LOCATED OUTSIDE OF THE MOLECULE; IT BINDS NEIGHBORING MOLECULES TOGETHER (SEE REFERENCE 1) AND THUS PARTICIPATES TO THE CRYSTAL LATTICE PACKING.
6
AC1
SOFTWARE
GLU A:130 , GLU B:130 , GLU C:130
BINDING SITE FOR RESIDUE CD A 201
7
AC2
SOFTWARE
ASP B:127 , ASP C:127
BINDING SITE FOR RESIDUE CD B 202
8
AC3
SOFTWARE
GLU D:130 , GLU E:130 , GLU F:130
BINDING SITE FOR RESIDUE CD D 203
9
AC4
SOFTWARE
THR B:10 , GLU B:11 , GLU C:11 , GLN C:120
BINDING SITE FOR RESIDUE CD B 205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: FERRITIN_LIKE (A:6-155,B:6-155,C:6-155,D:6-155,E:...)
2: FERRITIN_1 (A:57-75,B:57-75,C:57-75,D:57-75,E:...)
3: FERRITIN_2 (A:122-142,B:122-142,C:122-142,D:12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERRITIN_LIKE
PS50905
Ferritin-like diiron domain profile.
FRIL_HORSE
7-156
24
A:6-155
B:6-155
C:6-155
D:6-155
E:6-155
F:6-155
2
FERRITIN_1
PS00540
Ferritin iron-binding regions signature 1.
FRIL_HORSE
58-76
24
A:57-75
B:57-75
C:57-75
D:57-75
E:57-75
F:57-75
3
FERRITIN_2
PS00204
Ferritin iron-binding regions signature 2.
FRIL_HORSE
123-143
24
A:122-142
B:122-142
C:122-142
D:122-142
E:122-142
F:122-142
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1iesa_ (A:)
1b: SCOP_d1iesb_ (B:)
1c: SCOP_d1iesc_ (C:)
1d: SCOP_d1iesd_ (D:)
1e: SCOP_d1iese_ (E:)
1f: SCOP_d1iesf_ (F:)
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Protein Domains
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(
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
(Apo)ferritin
(68)
Horse (Equus caballus), L chain [TaxId: 9796]
(46)
1a
d1iesa_
A:
1b
d1iesb_
B:
1c
d1iesc_
C:
1d
d1iesd_
D:
1e
d1iese_
E:
1f
d1iesf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1iesA00 (A:1-174)
1b: CATH_1iesB00 (B:1-174)
1c: CATH_1iesC00 (C:1-174)
1d: CATH_1iesD00 (D:1-174)
1e: CATH_1iesE00 (E:1-174)
1f: CATH_1iesF00 (F:1-174)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Horse (Equus caballus)
(31)
1a
1iesA00
A:1-174
1b
1iesB00
B:1-174
1c
1iesC00
C:1-174
1d
1iesD00
D:1-174
1e
1iesE00
E:1-174
1f
1iesF00
F:1-174
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Pfam Domains
(0, 0)
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