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1IE7
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (416 KB)
Biol.Unit 3 (142 KB)
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(1)
Title
:
PHOSPHATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE
Authors
:
S. Benini, W. R. Rypniewski, K. S. Wilson, S. Ciurli, S. Mangani
Date
:
09 Apr 01 (Deposition) - 25 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (3x)
Biol. Unit 3: A,B,C (1x)
Keywords
:
Urease, Bacillus Pasteurii, Nickel, Metalloenzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Benini, W. R. Rypniewski, K. S. Wilson, S. Ciurli, S. Mangani
Structure-Based Rationalization Of Urease Inhibition By Phosphate: Novel Insights Into The Enzyme Mechanism.
J. Biol. Inorg. Chem. V. 6 778 2001
(for further references see the
PDB file header
)
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: N-CARBOXYMETHIONINE (CXMa)
2a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
4a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CXM
1
Mod. Amino Acid
N-CARBOXYMETHIONINE
2
KCX
1
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
3
NI
2
Ligand/Ion
NICKEL (II) ION
4
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
KCX C:220 , HIS C:222 , HIS C:249 , HIS C:275 , GLY C:280 , NI C:601 , PO4 C:901
BINDING SITE FOR RESIDUE NI C 600
2
AC2
SOFTWARE
HIS C:137 , HIS C:139 , KCX C:220 , ASP C:363 , NI C:600 , PO4 C:901
BINDING SITE FOR RESIDUE NI C 601
3
AC3
SOFTWARE
HIS C:137 , HIS C:139 , ALA C:170 , KCX C:220 , HIS C:222 , HIS C:249 , HIS C:275 , GLY C:280 , ASP C:363 , ALA C:366 , NI C:600 , NI C:601 , HOH C:1362
BINDING SITE FOR RESIDUE PO4 C 901
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UREASE_1 (C:130-143)
2: UREASE_3 (C:132-570)
3: UREASE_2 (C:320-336)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UREASE_1
PS01120
Urease nickel ligands signature.
URE1_SPOPA
129-142
1
C:130-143
2
UREASE_3
PS51368
Urease domain profile.
URE1_SPOPA
131-569
1
C:132-570
3
UREASE_2
PS00145
Urease active site.
URE1_SPOPA
319-335
1
C:320-336
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1ie7b_ (B:)
2a: SCOP_d1ie7c1 (C:1-131,C:435-483)
3a: SCOP_d1ie7a_ (A:)
4a: SCOP_d1ie7c2 (C:132-434,C:484-570)
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)
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)
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
Urease, beta-subunit
(40)
Family
:
Urease, beta-subunit
(40)
Protein domain
:
Urease, beta-subunit
(39)
Bacillus pasteurii [TaxId: 1474]
(6)
1a
d1ie7b_
B:
Fold
:
Composite domain of metallo-dependent hydrolases
(103)
Superfamily
:
Composite domain of metallo-dependent hydrolases
(103)
Family
:
alpha-Subunit of urease
(40)
Protein domain
:
alpha-Subunit of urease
(40)
Bacillus pasteurii [TaxId: 1474]
(7)
2a
d1ie7c1
C:1-131,C:435-483
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Urease, gamma-subunit
(42)
Superfamily
:
Urease, gamma-subunit
(42)
Family
:
Urease, gamma-subunit
(40)
Protein domain
:
Urease, gamma-subunit
(40)
Bacillus pasteurii [TaxId: 1474]
(7)
3a
d1ie7a_
A:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
alpha-subunit of urease, catalytic domain
(40)
Protein domain
:
alpha-subunit of urease, catalytic domain
(40)
Bacillus pasteurii [TaxId: 1474]
(7)
4a
d1ie7c2
C:132-434,C:484-570
[
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1ie7A00 (A:2-100)
2a: CATH_1ie7C02 (C:132-425,C:484-569)
3a: CATH_1ie7B00 (B:5-126)
4a: CATH_1ie7C01 (C:1-131,C:426-483)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Urease; subunit A
(36)
Homologous Superfamily
:
Urease, subunit A
(36)
Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33. Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33.
(1)
1a
1ie7A00
A:2-100
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33. Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33.
(1)
2a
1ie7C02
C:132-425,C:484-569
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Urease, subunit B
(35)
Homologous Superfamily
:
Urease, subunit B
(35)
Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33. Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33.
(1)
3a
1ie7B00
B:5-126
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33. Sporosarcina pasteurii. Organism_taxid: 1474. Strain: dsm 33.
(1)
4a
1ie7C01
C:1-131,C:426-483
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Pfam Domains
(0, 0)
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Asym.Unit (150 KB)
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