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1ICC
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (18 KB)
Biol.Unit 3 (18 KB)
Biol.Unit 4 (18 KB)
Biol.Unit 5 (34 KB)
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(1)
Title
:
RAT OUTER MITOCHONDRIAL MEMBRANE CYTOCHROME B5
Authors
:
S. Terzyan, X. Zhang
Date
:
30 Mar 01 (Deposition) - 19 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: B,C (1x)
Keywords
:
Cytochrome, X-Ray Diffraction, Heme, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Altuve, S. Silchenko, K. H. Lee, K. Kuczera, S. Terzyan, X. Zhang, D. R. Benson, M. Rivera
Probing The Differences Between Rat Liver Outer Mitochondrial Membrane Cytochrome B5 And Microsomal Cytochromes B5.
Biochemistry V. 40 9469 2001
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 7)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
MG
3
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:202 , HOH B:202 , HOH B:203 , HOH C:202 , HOH C:203 , HOH C:204
BINDING SITE FOR RESIDUE MG A 88
2
AC2
SOFTWARE
HOH A:203 , HOH A:204 , GLU C:69 , HOH C:205 , HOH C:206 , HOH D:202 , HOH D:203
BINDING SITE FOR RESIDUE MG C 88
3
AC3
SOFTWARE
HOH A:205 , HOH A:206 , HOH A:207 , HOH A:208 , HOH A:209 , HOH A:210
BINDING SITE FOR RESIDUE MG A 89
4
AC4
SOFTWARE
ASP A:1 , PRO A:2 , MET A:23 , PHE A:35 , HIS A:39 , PRO A:40 , GLY A:41 , VAL A:45 , LEU A:46 , PHE A:58 , VAL A:61 , HIS A:63 , SER A:64 , MET A:70 , LEU A:71 , HOH A:227
BINDING SITE FOR RESIDUE HEM A 201
5
AC5
SOFTWARE
PHE B:35 , HIS B:39 , PRO B:40 , GLY B:41 , VAL B:45 , LEU B:46 , PHE B:58 , VAL B:61 , HIS B:63 , SER B:64 , ALA B:67 , MET B:70 , LEU B:71 , SER C:57 , HEM C:201
BINDING SITE FOR RESIDUE HEM B 201
6
AC6
SOFTWARE
PRO B:40 , GLY B:42 , GLU B:43 , GLU B:44 , HEM B:201 , MET C:23 , ILE C:25 , PHE C:35 , HIS C:39 , PRO C:40 , GLY C:41 , VAL C:45 , LEU C:46 , PHE C:58 , VAL C:61 , HIS C:63 , SER C:64 , ALA C:67 , MET C:70 , LEU C:71 , HOH C:207 , HOH C:219 , HOH C:225
BINDING SITE FOR RESIDUE HEM C 201
7
AC7
SOFTWARE
PHE D:35 , HIS D:39 , PRO D:40 , GLY D:41 , VAL D:45 , LEU D:46 , GLN D:49 , PHE D:58 , VAL D:61 , HIS D:63 , SER D:64 , ALA D:67 , MET D:70 , LEU D:71 , HOH D:244
BINDING SITE FOR RESIDUE HEM D 201
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_B5_2 (A:4-80,B:4-80,C:4-80,D:4-80)
2: CYTOCHROME_B5_1 (A:35-42,B:35-42,C:35-42,D:35-42)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_B5_2
PS50255
Cytochrome b5 family, heme-binding domain profile.
CYB5B_RAT
20-96
4
A:4-80
B:4-80
C:4-80
D:4-80
2
CYTOCHROME_B5_1
PS00191
Cytochrome b5 family, heme-binding domain signature.
CYB5B_RAT
51-58
4
A:35-42
B:35-42
C:35-42
D:35-42
[
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]
Exons
(3, 12)
Info
All Exons
Exon 1.1 (A:1-38 | B:1-38 | C:4-38 | D:1-38)
Exon 1.2 (A:39-81 | B:39-81 | C:39-81 | D:39...)
Exon 1.3 (A:82-87 | B:82-87 | C:82-86 | D:82...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015006
1
ENSRNOE00000104782
chr19:
37016959-37017126
168
CYB5B_RAT
1-54
54
4
A:1-38
B:1-38
C:4-38
D:1-38
38
38
35
38
1.2
ENSRNOT00000015006
2
ENSRNOE00000105131
chr19:
37036324-37036452
129
CYB5B_RAT
55-97
43
4
A:39-81
B:39-81
C:39-81
D:39-81
43
43
43
43
1.3
ENSRNOT00000015006
3
ENSRNOE00000105523
chr19:
37036904-37036933
30
CYB5B_RAT
98-107
10
4
A:82-87
B:82-87
C:82-86
D:82-87
6
6
5
6
1.4
ENSRNOT00000015006
4
ENSRNOE00000105590
chr19:
37045457-37045485
29
CYB5B_RAT
108-117
10
0
-
-
1.5
ENSRNOT00000015006
5
ENSRNOE00000295386
chr19:
37048353-37050718
2366
CYB5B_RAT
117-146
30
0
-
-
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1icca_ (A:)
1b: SCOP_d1iccb_ (B:)
1c: SCOP_d1iccc_ (C:)
1d: SCOP_d1iccd_ (D:)
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(
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cytochrome b5-like heme/steroid binding domain
(64)
Superfamily
:
Cytochrome b5-like heme/steroid binding domain
(64)
Family
:
Cytochrome b5
(57)
Protein domain
:
Cytochrome b5
(38)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(20)
1a
d1icca_
A:
1b
d1iccb_
B:
1c
d1iccc_
C:
1d
d1iccd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1iccA00 (A:1-87)
1b: CATH_1iccB00 (B:1-87)
1c: CATH_1iccD00 (D:1-87)
1d: CATH_1iccC00 (C:4-86)
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(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Flavocytochrome B2; Chain A, domain 1
(56)
Homologous Superfamily
:
Flavocytochrome B2, subunit A, domain 1
(56)
Norway rat (Rattus norvegicus)
(20)
1a
1iccA00
A:1-87
1b
1iccB00
B:1-87
1c
1iccD00
D:1-87
1d
1iccC00
C:4-86
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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)
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Backbone
Sidechain
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (72 KB)
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