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1IBY
Biol. Unit 1
Info
Asym.Unit (88 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
RED COPPER PROTEIN NITROSOCYANIN FROM NITROSOMONAS EUROPAEA
Authors
:
R. L. Lieberman, D. M. Arciero, A. B. Hooper, A. C. Rosenzweig
Date
:
29 Mar 01 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D (3x)
Keywords
:
Red Copper, Cupredoxin, Beta Hairpin, Nitrosocyanin, Nitrosomonas Europaea, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. L. Lieberman, D. M. Arciero, A. B. Hooper, A. C. Rosenzweig
Crystal Structure Of A Novel Red Copper Protein From Nitrosomonas Europaea.
Biochemistry V. 40 5674 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
2a: HEXANE-1,6-DIOL (HEZa)
2b: HEXANE-1,6-DIOL (HEZb)
2c: HEXANE-1,6-DIOL (HEZc)
2d: HEXANE-1,6-DIOL (HEZd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
HEZ
3
Ligand/Ion
HEXANE-1,6-DIOL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:60 , CYS A:95 , HIS A:98 , HIS A:103 , HOH A:1238
BINDING SITE FOR RESIDUE CU A 601
2
AC2
SOFTWARE
GLU C:60 , CYS C:95 , HIS C:98 , HIS C:103 , HOH C:1269
BINDING SITE FOR RESIDUE CU C 602
3
AC3
SOFTWARE
GLU B:60 , CYS B:95 , HIS B:98 , HIS B:103 , HOH B:1310
BINDING SITE FOR RESIDUE CU B 603
4
AC5
SOFTWARE
PHE A:31 , VAL A:33 , ILE A:58 , GLU A:60 , HIS A:98 , PRO A:99 , HOH A:1238 , HOH A:1245 , ILE C:15 , HEZ D:1171
BINDING SITE FOR RESIDUE HEZ A 1169
5
AC6
SOFTWARE
LEU A:18 , VAL B:33 , LYS B:49 , LEU B:97 , ILE B:102 , HOH B:1310
BINDING SITE FOR RESIDUE HEZ B 1170
6
AC7
SOFTWARE
HEZ A:1169 , LEU D:18 , PHE D:31 , VAL D:33 , LEU D:97 , HIS D:98 , PRO D:99 , ILE D:102 , HOH D:1270 , HOH D:1300
BINDING SITE FOR RESIDUE HEZ D 1171
7
AC8
SOFTWARE
LEU B:18 , HOH B:1281 , PHE C:31 , VAL C:33 , ILE C:58 , GLU C:60 , LEU C:97 , HIS C:98 , PRO C:99 , HOH C:1269 , HOH C:1271
BINDING SITE FOR RESIDUE HEZ C 1172
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ibya_ (A:)
1b: SCOP_d1ibyb_ (B:)
1c: SCOP_d1ibyc_ (C:)
1d: SCOP_d1ibyd_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Nitrosocyanin
(5)
Protein domain
:
Red copper protein nitrosocyanin
(3)
Nitrosomonas europaea [TaxId: 915]
(3)
1a
d1ibya_
A:
1b
d1ibyb_
B:
1c
d1ibyc_
C:
1d
d1ibyd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ibyA00 (A:1-112)
1b: CATH_1ibyB00 (B:1-112)
1c: CATH_1ibyC00 (C:1-112)
1d: CATH_1ibyD00 (D:1-112)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Nitrosomonas europaea. Organism_taxid: 915
(3)
1a
1ibyA00
A:1-112
1b
1ibyB00
B:1-112
1c
1ibyC00
C:1-112
1d
1ibyD00
D:1-112
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
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