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1IBR
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
COMPLEX OF RAN WITH IMPORTIN BETA
Authors
:
I. R. Vetter, A. Arndt, U. Kutay, D. Goerlich, A. Wittinghofer
Date
:
14 May 99 (Deposition) - 03 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Small Gtpase; Nuclear Transport Receptor, Cell Cycle, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. R. Vetter, A. Arndt, U. Kutay, D. Gorlich, A. Wittinghofer
Structural View Of The Ran-Importin Beta Interaction At 2. 3 A Resolution
Cell(Cambridge, Mass. ) V. 97 635 1999
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:24 , VAL A:40 , THR A:42 , GNP A:250 , HOH A:597
BINDING SITE FOR RESIDUE MG A 251
2
AC2
SOFTWARE
THR C:24 , VAL C:40 , THR C:42 , GNP C:252
BINDING SITE FOR RESIDUE MG C 253
3
AC3
SOFTWARE
GLY A:19 , GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , THR A:24 , THR A:25 , PHE A:35 , GLU A:36 , LYS A:37 , LYS A:38 , TYR A:39 , ALA A:41 , THR A:42 , GLY A:68 , GLN A:69 , ASN A:122 , LYS A:123 , ASP A:125 , ILE A:126 , SER A:150 , ALA A:151 , LYS A:152 , MG A:251 , HOH A:577 , HOH A:596 , HOH A:597
BINDING SITE FOR RESIDUE GNP A 250
4
AC4
SOFTWARE
GLY C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , THR C:25 , PHE C:35 , GLU C:36 , LYS C:37 , LYS C:38 , TYR C:39 , ALA C:41 , THR C:42 , GLY C:68 , GLN C:69 , ASN C:122 , LYS C:123 , ASP C:125 , ILE C:126 , SER C:150 , ALA C:151 , LYS C:152 , MG C:253 , HOH C:603
BINDING SITE FOR RESIDUE GNP C 252
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051900 (R95I, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
A/C
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IMPORTIN_B_NT (B:21-101,D:21-101)
2: HEAT_REPEAT (B:409-446,D:409-439)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
IMB1_HUMAN
21-101
2
B:21-101
D:21-101
2
HEAT_REPEAT
PS50077
HEAT repeat profile.
IMB1_HUMAN
409-446
2
B:409-446
D:409-439
[
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]
Exons
(16, 32)
Info
All Exons
Exon 1.1 (B:2-14 | D:2-14)
Exon 1.2 (B:14-33 | D:14-33)
Exon 1.3 (B:34-94 | D:34-94)
Exon 1.4 (B:95-161 | D:95-161)
Exon 1.5 (B:162-212 | D:162-212)
Exon 1.6 (B:213-232 | D:213-232)
Exon 1.7 (B:233-262 | D:233-262)
Exon 1.8 (B:263-299 | D:263-299)
Exon 1.9 (B:300-333 | D:300-333)
Exon 1.10 (B:334-408 | D:334-408)
Exon 1.11 (B:409-459 | D:409-439)
Exon 2.2a (A:9-32 | C:9-32)
Exon 2.2d (A:33-61 | C:33-61)
Exon 2.3 (A:61-103 | C:61-103)
Exon 2.5b (A:103-165 | C:103-165)
Exon 2.6c (A:166-177 | C:166-177)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary -/2.2a
14: Boundary 2.2a/2.2d
15: Boundary 2.2d/2.3
16: Boundary 2.3/2.5b
17: Boundary 2.5b/2.6c
18: Boundary 2.6c/2.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000290158
1
ENSE00001328366
chr17:
45727275-45727650
376
IMB1_HUMAN
1-14
14
2
B:2-14
D:2-14
13
13
1.2
ENST00000290158
2
ENSE00001110328
chr17:
45727752-45727810
59
IMB1_HUMAN
14-33
20
2
B:14-33
D:14-33
20
20
1.3
ENST00000290158
3
ENSE00001043051
chr17:
45730060-45730242
183
IMB1_HUMAN
34-94
61
2
B:34-94
D:34-94
61
61
1.4
ENST00000290158
4
ENSE00000924979
chr17:
45734226-45734426
201
IMB1_HUMAN
95-161
67
2
B:95-161
D:95-161
67
67
1.5
ENST00000290158
5
ENSE00000924980
chr17:
45735874-45736026
153
IMB1_HUMAN
162-212
51
2
B:162-212
D:162-212
51
51
1.6
ENST00000290158
6
ENSE00000924981
chr17:
45738485-45738544
60
IMB1_HUMAN
213-232
20
2
B:213-232
D:213-232
20
20
1.7
ENST00000290158
7
ENSE00000924982
chr17:
45740455-45740544
90
IMB1_HUMAN
233-262
30
2
B:233-262
D:233-262
30
30
1.8
ENST00000290158
8
ENSE00000924983
chr17:
45741525-45741635
111
IMB1_HUMAN
263-299
37
2
B:263-299
D:263-299
37
37
1.9
ENST00000290158
9
ENSE00000924984
chr17:
45742423-45742524
102
IMB1_HUMAN
300-333
34
2
B:300-333
D:300-333
34
34
1.10
ENST00000290158
10
ENSE00000924985
chr17:
45745552-45745776
225
IMB1_HUMAN
334-408
75
2
B:334-408
D:334-408
75
75
1.11
ENST00000290158
11
ENSE00001043047
chr17:
45747044-45747235
192
IMB1_HUMAN
409-472
64
2
B:409-459
D:409-439
51
31
1.12
ENST00000290158
12
ENSE00000924987
chr17:
45748068-45748198
131
IMB1_HUMAN
473-516
44
0
-
-
1.13
ENST00000290158
13
ENSE00001043027
chr17:
45750384-45750531
148
IMB1_HUMAN
516-565
50
0
-
-
1.14
ENST00000290158
14
ENSE00000924989
chr17:
45750856-45750927
72
IMB1_HUMAN
566-589
24
0
-
-
1.15
ENST00000290158
15
ENSE00000924990
chr17:
45752004-45752148
145
IMB1_HUMAN
590-638
49
0
-
-
1.16
ENST00000290158
16
ENSE00000924991
chr17:
45753775-45753857
83
IMB1_HUMAN
638-665
28
0
-
-
1.17
ENST00000290158
17
ENSE00000924992
chr17:
45754386-45754493
108
IMB1_HUMAN
666-701
36
0
-
-
1.18
ENST00000290158
18
ENSE00000924993
chr17:
45755412-45755555
144
IMB1_HUMAN
702-749
48
0
-
-
1.19
ENST00000290158
19
ENSE00000924994
chr17:
45755674-45755779
106
IMB1_HUMAN
750-785
36
0
-
-
1.20
ENST00000290158
20
ENSE00000924995
chr17:
45757386-45757500
115
IMB1_HUMAN
785-823
39
0
-
-
1.21
ENST00000290158
21
ENSE00000924996
chr17:
45757874-45758035
162
IMB1_HUMAN
823-877
55
0
-
-
1.22
ENST00000290158
22
ENSE00001343442
chr17:
45759770-45760998
1229
IMB1_HUMAN
877-878
2
0
-
-
2.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
2
A:9-32
C:9-32
24
24
2.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
2
A:33-61
C:33-61
29
29
2.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
2
A:61-103
C:61-103
43
43
2.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
2
A:103-165
C:103-165
63
63
2.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
2
A:166-177
C:166-177
12
12
2.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ibrb_ (B:)
1b: SCOP_d1ibrd_ (D:)
2a: SCOP_d1ibra_ (A:)
2b: SCOP_d1ibrc_ (C:)
View:
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
Importin beta
(14)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1ibrb_
B:
1b
d1ibrd_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Ran
(37)
Human (Homo sapiens) [TaxId: 9606]
(29)
2a
d1ibra_
A:
2b
d1ibrc_
C:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ibrA00 (A:9-177)
1b: CATH_1ibrC00 (C:9-177)
2a: CATH_1ibrB00 (B:2-459)
2b: CATH_1ibrD00 (D:2-439)
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Architectures
(
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(
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1ibrA00
A:9-177
1b
1ibrC00
C:9-177
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
2a
1ibrB00
B:2-459
2b
1ibrD00
D:2-439
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain C
Chain D
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Asym.Unit (211 KB)
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