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1IA5
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
POLYGALACTURONASE FROM ASPERGILLUS ACULEATUS
Authors
:
S. W. Cho, S. Lee, W. Shin
Date
:
22 Mar 01 (Deposition) - 19 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Polygalacturonase, Glycosylhydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Cho, S. Lee, W. Shin
The X-Ray Structure Of Aspergillus Aculeatus Polygalacturonase And A Modeled Structure Of The Polygalacturonase-Octagalacturonate Complex.
J. Mol. Biol. V. 311 863 2001
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
1c: ALPHA-D-MANNOSE (MANc)
1d: ALPHA-D-MANNOSE (MANd)
1e: ALPHA-D-MANNOSE (MANe)
1f: ALPHA-D-MANNOSE (MANf)
1g: ALPHA-D-MANNOSE (MANg)
1h: ALPHA-D-MANNOSE (MANh)
1i: ALPHA-D-MANNOSE (MANi)
1j: ALPHA-D-MANNOSE (MANj)
1k: ALPHA-D-MANNOSE (MANk)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MAN
11
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:1 , THR A:3 , THR A:5
BINDING SITE FOR RESIDUE MAN A 405
02
AC2
SOFTWARE
SER A:7 , THR A:317 , ASP A:318 , HOH A:585
BINDING SITE FOR RESIDUE MAN A 407
03
AC3
SOFTWARE
SER A:9 , SER A:213 , ASN A:215 , THR A:216 , THR A:243 , GLY A:244 , SER A:245 , ASN A:290 , HIS A:292 , HOH A:617 , HOH A:632
BINDING SITE FOR RESIDUE MAN A 409
04
AC4
SOFTWARE
ASN A:10 , SER A:13 , LYS A:17 , THR A:284 , MAN A:414 , MAN A:416 , HOH A:542 , HOH A:685
BINDING SITE FOR RESIDUE MAN A 413
05
AC5
SOFTWARE
ALA A:1 , ASN A:10 , SER A:14 , MAN A:413 , MAN A:418 , HOH A:520 , HOH A:684 , HOH A:692
BINDING SITE FOR RESIDUE MAN A 414
06
AC6
SOFTWARE
SER A:13 , SER A:16 , ASP A:39 , MAN A:413 , HOH A:595
BINDING SITE FOR RESIDUE MAN A 416
07
AC7
SOFTWARE
THR A:2 , PHE A:6 , SER A:14 , LYS A:17 , SER A:18 , MAN A:414 , MAN A:423
BINDING SITE FOR RESIDUE MAN A 418
08
AC8
SOFTWARE
ALA A:1 , THR A:20 , CYS A:22 , SER A:23 , ASN A:44 , MAN A:418 , HOH A:527
BINDING SITE FOR RESIDUE MAN A 423
09
AC9
SOFTWARE
THR A:3 , THR A:24 , HIS A:48
BINDING SITE FOR RESIDUE MAN A 424
10
BC1
SOFTWARE
SER A:34 , TYR A:59 , LYS A:60 , THR A:167 , GLU A:189 , ASN A:190 , HOH A:601 , HOH A:619
BINDING SITE FOR RESIDUE MAN A 434
11
BC2
SOFTWARE
ASN A:190 , ASN A:219 , NAG A:352 , HOH A:521 , HOH A:579 , HOH A:619
BINDING SITE FOR RESIDUE NAG A 351
12
BC3
SOFTWARE
TYR A:168 , NAG A:351 , MAN A:353
BINDING SITE FOR RESIDUE NAG A 352
13
BC4
SOFTWARE
NAG A:352
BINDING SITE FOR RESIDUE MAN A 353
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: POLYGALACTURONASE (A:195-208)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLYGALACTURONASE
PS00502
Polygalacturonase active site.
PGLR1_ASPAC
234-247
1
A:195-208
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ia5a_ (A:)
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)
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)
Folds
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
Pectin lyase-like
(89)
Family
:
Galacturonase
(11)
Protein domain
:
Polygalacturonase
(9)
Fungus (Aspergillus aculeatus) [TaxId: 5053]
(2)
1a
d1ia5a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ia5A00 (A:1-339)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Aspergillus aculeatus. Organism_taxid: 5053
(2)
1a
1ia5A00
A:1-339
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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