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1I75
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (227 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYCLODEXTRIN GLUCANOTRANSFERASE FROM ALKALOPHILIC BACILLUS SP.#1011 COMPLEXED WITH 1-DEOXYNOJIRIMYCIN
Authors
:
R. Kanai, K. Haga, K. Yamane, K. Harata
Date
:
08 Mar 01 (Deposition) - 11 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Inhibitor Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kanai, K. Haga, K. Yamane, K. Harata
Crystal Structure Of Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Complexed With 1-Deoxynojirimycin At 2. 0 A Resolution.
J. Biochem. (Tokyo) V. 129 593 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 1-DEOXYNOJIRIMYCIN (NOJa)
2b: 1-DEOXYNOJIRIMYCIN (NOJb)
2c: 1-DEOXYNOJIRIMYCIN (NOJc)
2d: 1-DEOXYNOJIRIMYCIN (NOJd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
NOJ
4
Ligand/Ion
1-DEOXYNOJIRIMYCIN
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:1184
BINDING SITE FOR RESIDUE CA A 1687
2
AC2
SOFTWARE
ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233 , HOH A:739 , HOH A:751 , HOH A:1137
BINDING SITE FOR RESIDUE CA A 1688
3
AC3
SOFTWARE
ASP B:27 , ASN B:29 , ASN B:32 , ASN B:33 , GLY B:51 , ASP B:53 , HOH B:1095
BINDING SITE FOR RESIDUE CA B 1689
4
AC4
SOFTWARE
ASN B:139 , ILE B:190 , ASP B:199 , HIS B:233 , HOH B:784 , HOH B:1071 , HOH B:1082
BINDING SITE FOR RESIDUE CA B 1690
5
AC5
SOFTWARE
TYR A:100 , LEU A:194 , ASP A:229 , ASP A:328 , HOH A:894 , HOH A:972 , HOH A:1015
BINDING SITE FOR RESIDUE NOJ A 2691
6
AC6
SOFTWARE
LYS A:651 , ASN A:667
BINDING SITE FOR RESIDUE NOJ A 2692
7
AC7
SOFTWARE
TYR B:100 , HIS B:140 , ASP B:229 , ASP B:328 , HOH B:824
BINDING SITE FOR RESIDUE NOJ B 2693
8
AC8
SOFTWARE
TRP B:616 , ASN B:667
BINDING SITE FOR RESIDUE NOJ B 2694
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CBM20 (A:581-686,B:581-686)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM20
PS51166
CBM20 (carbohydrate binding type-20) domain profile.
CDGT_BACS0
608-713
2
A:581-686
B:581-686
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1i75a3 (A:407-496)
1b: SCOP_d1i75b3 (B:407-496)
2a: SCOP_d1i75a1 (A:497-582)
2b: SCOP_d1i75b1 (B:497-582)
3a: SCOP_d1i75a2 (A:583-686)
3b: SCOP_d1i75b2 (B:583-686)
4a: SCOP_d1i75a4 (A:1-406)
4b: SCOP_d1i75b4 (B:1-406)
View:
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)
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)
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)
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus sp., strain 1011 [TaxId: 1409]
(8)
1a
d1i75a3
A:407-496
1b
d1i75b3
B:407-496
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Cyclomaltodextrin glycanotransferase, domain D
(49)
Bacillus sp., strain 1011 [TaxId: 1409]
(8)
2a
d1i75a1
A:497-582
2b
d1i75b1
B:497-582
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
Cyclodextrin glycosyltransferase, C-terminal domain
(51)
Bacillus sp., strain 1011 [TaxId: 1409]
(8)
3a
d1i75a2
A:583-686
3b
d1i75b2
B:583-686
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus sp. 1011, alkaliphilic [TaxId: 1410]
(8)
4a
d1i75a4
A:1-406
4b
d1i75b4
B:1-406
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1i75A01 (A:1-400)
1b: CATH_1i75B01 (B:1-400)
2a: CATH_1i75A02 (A:401-495)
2b: CATH_1i75B02 (B:401-495)
3a: CATH_1i75A04 (A:583-685)
3b: CATH_1i75B04 (B:583-685)
3c: CATH_1i75A03 (A:496-582)
3d: CATH_1i75B03 (B:496-582)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus sp.. Organism_taxid: 1409.
(1)
1a
1i75A01
A:1-400
1b
1i75B01
B:1-400
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Bacillus sp.. Organism_taxid: 1409.
(1)
2a
1i75A02
A:401-495
2b
1i75B02
B:401-495
Homologous Superfamily
:
Immunoglobulins
(2282)
Bacillus sp.. Organism_taxid: 1409.
(1)
3a
1i75A04
A:583-685
3b
1i75B04
B:583-685
3c
1i75A03
A:496-582
3d
1i75B03
B:496-582
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (233 KB)
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