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1I3R
Biol. Unit 5
Info
Asym.Unit (279 KB)
Biol.Unit 1 (271 KB)
Biol.Unit 2 (72 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (72 KB)
Biol.Unit 5 (72 KB)
Biol.Unit 6 (139 KB)
Biol.Unit 7 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MUTANT IEK CLASS II MHC MOLECULE
Authors
:
J. W. Kappler, N. Wilson
Date
:
15 Feb 01 (Deposition) - 20 Jun 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: E,F,G,H (1x)
Biol. Unit 7: A,B,C,D (1x)
Keywords
:
Mhc Classii, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Wilson, D. Fremont, P. Marrack, J. Kappler
Mutations Changing The Kinetics Of Class Ii Mhc Peptide Exchange.
Immunity V. 14 513 2001
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:78 , VAL B:20
BINDING SITE FOR RESIDUE NAG A 301
2
AC2
SOFTWARE
ASN A:118 , ASP A:166 , TRP A:168 , NAG A:303 , HOH A:340
BINDING SITE FOR RESIDUE NAG A 302
3
AC3
SOFTWARE
NAG A:302
BINDING SITE FOR RESIDUE NAG A 303
4
AC4
SOFTWARE
TYR B:44 , ASN B:45 , GLN B:48
BINDING SITE FOR RESIDUE NAG B 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:161-167)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
HA22_MOUSE
186-192
1
A:161-167
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1i3ra1 (A:82-182)
1b: SCOP_d1i3re1 (E:82-182)
1c: SCOP_d1i3rg1 (G:82-182)
1d: SCOP_d1i3rc1 (C:82-182)
2a: SCOP_d1i3rb1 (B:121-216)
2b: SCOP_d1i3rf1 (F:121-216)
2c: SCOP_d1i3rh1 (H:121-216)
2d: SCOP_d1i3rd1 (D:121-216)
3a: SCOP_d1i3ra2 (A:1-81)
3b: SCOP_d1i3re2 (E:1-81)
3c: SCOP_d1i3rg2 (G:1-81)
3d: SCOP_d1i3rc2 (C:1-81)
4a: SCOP_d1i3rb2 (B:1-120)
4b: SCOP_d1i3rf2 (F:1-120)
4c: SCOP_d1i3rh2 (H:1-120)
4d: SCOP_d1i3rd2 (D:1-120)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Class II MHC alpha chain, C-terminal domain
(75)
Mouse (Mus musculus), I-E group [TaxId: 10090]
(9)
1a
d1i3ra1
A:82-182
1b
d1i3re1
E:82-182
1c
d1i3rg1
G:82-182
1d
d1i3rc1
C:82-182
Protein domain
:
Class II MHC beta chain, C-terminal domain
(70)
Mouse (Mus musculus), I-E group [TaxId: 10090]
(9)
2a
d1i3rb1
B:121-216
2b
d1i3rf1
F:121-216
2c
d1i3rh1
H:121-216
2d
d1i3rd1
D:121-216
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class II MHC alpha chain, N-terminal domain
(75)
Mouse (Mus musculus), I-EK [TaxId: 10090]
(9)
3a
d1i3ra2
A:1-81
3b
d1i3re2
E:1-81
3c
d1i3rg2
G:1-81
3d
d1i3rc2
C:1-81
Protein domain
:
Class II MHC beta chain, N-terminal domain
(70)
Mouse (Mus musculus), I-EK [TaxId: 10090]
(9)
4a
d1i3rb2
B:1-120
4b
d1i3rf2
F:1-120
4c
d1i3rh2
H:1-120
4d
d1i3rd2
D:1-120
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1i3rB01 (B:32-119)
1b: CATH_1i3rD01 (D:32-119)
1c: CATH_1i3rF01 (F:32-119)
1d: CATH_1i3rH01 (H:32-119)
1e: CATH_1i3rA01 (A:3-81)
1f: CATH_1i3rC01 (C:3-81)
1g: CATH_1i3rE01 (E:3-81)
1h: CATH_1i3rG01 (G:3-81)
2a: CATH_1i3rA02 (A:82-181)
2b: CATH_1i3rC02 (C:82-181)
2c: CATH_1i3rE02 (E:82-181)
2d: CATH_1i3rG02 (G:82-181)
2e: CATH_1i3rB02 (B:120-216)
2f: CATH_1i3rD02 (D:120-216)
2g: CATH_1i3rF02 (F:120-216)
2h: CATH_1i3rH02 (H:120-216)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
House mouse (Mus musculus)
(25)
1a
1i3rB01
B:32-119
1b
1i3rD01
D:32-119
1c
1i3rF01
F:32-119
1d
1i3rH01
H:32-119
1e
1i3rA01
A:3-81
1f
1i3rC01
C:3-81
1g
1i3rE01
E:3-81
1h
1i3rG01
G:3-81
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1i3rA02
A:82-181
2b
1i3rC02
C:82-181
2c
1i3rE02
E:82-181
2d
1i3rG02
G:82-181
2e
1i3rB02
B:120-216
2f
1i3rD02
D:120-216
2g
1i3rF02
F:120-216
2h
1i3rH02
H:120-216
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (279 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
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Biol.Unit 3 (72 KB)
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Biol.Unit 4 (72 KB)
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Biol.Unit 5 (72 KB)
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Biol.Unit 6 (139 KB)
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