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1I3O
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF XIAP-BIR2 AND CASPASE 3
Authors
:
S. J. Riedl, M. Renatus, R. Schwarzenbacher, Q. Zhou, C. Sun, S. W. Fesik, R. C. Liddington, G. S. Salvesen
Date
:
15 Feb 01 (Deposition) - 21 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Complex, Iap, Caspase, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Riedl, M. Renatus, R. Schwarzenbacher, Q. Zhou, C. Sun, S. W. Fesik, R. C. Liddington, G. S. Salvesen
Structural Basis For The Inhibition Of Caspase-3 By Xiap.
Cell(Cambridge, Mass. ) V. 104 791 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS E:200 , CYS E:203 , HIS E:220 , CYS E:227
BINDING SITE FOR RESIDUE ZN E 1
2
AC2
SOFTWARE
CYS F:200 , CYS F:203 , HIS F:220 , CYS F:227
BINDING SITE FOR RESIDUE ZN F 2
[
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]
SAPs(SNPs)/Variants
(2, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022283 (S133F, chain E, )
2: VAR_001401 (E324D, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022283
S
133
F
XIAP_HUMAN
Polymorphism
28382722
E
S
133
F
2
UniProt
VAR_001401
E
190
D
CASP3_HUMAN
Polymorphism
1049210
B/D
E
324
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(6, 12)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (-|E:163-230,F:163-230|-)
2: BIR_REPEAT_2 (-|E:166-231,F:166-231|-)
3: CASPASE_P20 (A:162-289,C:162-289)
4: CASPASE_HIS (A:224-238,C:224-238)
5: CASPASE_CYS (A:276-287,C:276-287)
6: CASPASE_P10 (B:317-401,D:317-401)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
XIAP_HUMAN
26-93
163-230
265-330
2
-
E:163-230
F:163-230
-
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
XIAP_HUMAN
29-94
166-231
268-331
2
-
E:166-231
F:166-231
-
3
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP3_HUMAN
43-167
2
A:162-289
C:162-289
4
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP3_HUMAN
108-122
2
A:224-238
C:224-238
5
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP3_HUMAN
154-165
2
A:276-287
C:276-287
6
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP3_HUMAN
183-277
2
B:317-401
D:317-401
[
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]
Exons
(6, 14)
Info
All Exons
Exon 1.6 (A:148-175C (gaps) | - | C:148-175C...)
Exon 1.7 (A:175C-218 | - | C:175C-218 | -)
Exon 1.8b (A:218-283 (gaps) | - | C:218-283 (...)
Exon 1.9 (A:284-296 | B:310-336 | C:284-297 ...)
Exon 1.10d (- | B:336-401 (gaps) | - | D:336-4...)
Exon 2.3c (E:127-237 | F:135-236 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8b
4: Boundary 1.8b/1.9
5: Boundary 1.9/1.10d
6: Boundary 1.10d/-
7: Boundary 2.2a/2.3c
8: Boundary 2.3c/2.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308394
1b
ENSE00001083267
chr4:
185570629-185570549
81
CASP3_HUMAN
-
0
0
-
-
1.2b
ENST00000308394
2b
ENSE00001215704
chr4:
185569785-185569619
167
CASP3_HUMAN
-
0
0
-
-
1.5
ENST00000308394
5
ENSE00001623195
chr4:
185559622-185559555
68
CASP3_HUMAN
1-18
18
0
-
-
1.6
ENST00000308394
6
ENSE00001083265
chr4:
185556572-185556448
125
CASP3_HUMAN
18-60
43
2
A:148-175C (gaps)
-
C:148-175C (gaps)
-
33
-
33
-
1.7
ENST00000308394
7
ENSE00001083266
chr4:
185553550-185553422
129
CASP3_HUMAN
60-103
44
2
A:175C-218
-
C:175C-218
-
44
-
44
-
1.8b
ENST00000308394
8b
ENSE00001083271
chr4:
185553094-185552919
176
CASP3_HUMAN
103-161
59
2
A:218-283 (gaps)
-
C:218-283 (gaps)
-
66
-
66
-
1.9
ENST00000308394
9
ENSE00001083268
chr4:
185552311-185552191
121
CASP3_HUMAN
162-202
41
4
A:284-296
B:310-336
C:284-297
D:310-336
13
27
14
27
1.10d
ENST00000308394
10d
ENSE00001695797
chr4:
185550655-185548850
1806
CASP3_HUMAN
202-277
76
2
-
B:336-401 (gaps)
-
D:336-401 (gaps)
-
76
-
76
2.2a
ENST00000371199
2a
ENSE00001810722
X:122993877-122994143
267
XIAP_HUMAN
-
0
0
-
-
2.3c
ENST00000371199
3c
ENSE00002176074
X:123019481-123020389
909
XIAP_HUMAN
1-293
293
2
E:127-237
F:135-236 (gaps)
111
102
2.4b
ENST00000371199
4b
ENSE00001649641
X:123022469-123022568
100
XIAP_HUMAN
293-326
34
0
-
-
2.5b
ENST00000371199
5b
ENSE00001630752
X:123025088-123025166
79
XIAP_HUMAN
326-352
27
0
-
-
2.6
ENST00000371199
6
ENSE00001714518
X:123026581-123026623
43
XIAP_HUMAN
353-367
15
0
-
-
2.7b
ENST00000371199
7b
ENSE00001653318
X:123034343-123034543
201
XIAP_HUMAN
367-434
68
0
-
-
2.8e
ENST00000371199
8e
ENSE00001454620
X:123040838-123047829
6992
XIAP_HUMAN
434-497
64
0
-
-
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1i3o_1 (A:,B:)
1b: SCOP_d1i3o_2 (C:,D:)
2a: SCOP_d1i3oe_ (E:)
2b: SCOP_d1i3of_ (F:)
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(
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(
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Apopain (caspase-3, cpp32)
(27)
Human (Homo sapiens) [TaxId: 9606]
(27)
1a
d1i3o.1
A:,B:
1b
d1i3o.2
C:,D:
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
BIR domains of XIAP
(15)
Human (Homo sapiens) [TaxId: 9606]
(15)
2a
d1i3oe_
E:
2b
d1i3of_
F:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1i3oB00 (B:310-401)
1b: CATH_1i3oD00 (D:310-401)
2a: CATH_1i3oC00 (C:148-297)
2b: CATH_1i3oA00 (A:148-296)
3a: CATH_1i3oF00 (F:135-236)
3b: CATH_1i3oE00 (E:127-237)
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
Caspase-like
(31)
Human (Homo sapiens)
(31)
1a
1i3oB00
B:310-401
1b
1i3oD00
D:310-401
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
2a
1i3oC00
C:148-297
2b
1i3oA00
A:148-296
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
3a
1i3oF00
F:135-236
3b
1i3oE00
E:127-237
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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