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1I3D
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
HUMAN CARBONMONOXY HEMOGLOBIN BART'S (GAMMA4)
Authors
:
R. D. Kidd, H. M. Baker, A. J. Mathews, T. Brittain, E. N. Baker
Date
:
15 Feb 01 (Deposition) - 12 Sep 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Oxygen Transport, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. D. Kidd, H. M. Baker, A. J. Mathews, T. Brittain, E. N. Baker
Oligomerization And Ligand Binding In A Homotetrameric Hemoglobin: Two High-Resolution Crystal Structures Of Hemoglobin Bart'S (Gamma(4)), A Marker For Alpha-Thalassemia.
Protein Sci. V. 10 1739 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CARBON MONOXIDE (CMOa)
1b: CARBON MONOXIDE (CMOb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMO
2
Ligand/Ion
CARBON MONOXIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:41 , PHE A:42 , HIS A:63 , LYS A:66 , SER A:70 , LEU A:88 , HIS A:92 , LEU A:96 , VAL A:98 , ASN A:102 , PHE A:103 , LEU A:106 , LEU A:141 , CMO A:148 , HOH A:347 , HOH A:441 , HOH A:472 , SER B:50
BINDING SITE FOR RESIDUE HEM A 147
2
AC2
SOFTWARE
HIS A:63 , VAL A:67 , HEM A:147
BINDING SITE FOR RESIDUE CMO A 148
3
AC3
SOFTWARE
SER A:50 , SER A:52 , HOH A:332 , PHE B:41 , PHE B:42 , PHE B:45 , HIS B:63 , VAL B:67 , SER B:70 , LEU B:91 , HIS B:92 , LEU B:96 , VAL B:98 , ASN B:102 , LEU B:106 , LEU B:141 , CMO B:148 , HOH B:390
BINDING SITE FOR RESIDUE HEM B 147
4
AC4
SOFTWARE
HIS B:63 , VAL B:67 , HEM B:147
BINDING SITE FOR RESIDUE CMO B 148
[
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]
SAPs(SNPs)/Variants
(25, 50)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003124 (H2Q, chain A/B, )
02: VAR_003125 (E5K, chain A/B, )
03: VAR_003127 (E6G, chain A/B, )
04: VAR_003128 (E6Q, chain A/B, )
05: VAR_003130 (T12R, chain A/B, )
06: VAR_003135 (D22G, chain A/B, )
07: VAR_003138 (G25R, chain A/B, )
08: VAR_003141 (P36R, chain A/B, )
09: VAR_003142 (W37G, chain A/B, )
10: VAR_003143 (Q39R, chain A/B, )
11: VAR_003145 (R40K, chain A/B, )
12: VAR_003147 (D43N, chain A/B, )
13: VAR_003149 (A53D, chain A/B, )
14: VAR_003153 (K61E, chain A/B, )
15: VAR_003158 (G72R, chain A/B, )
16: VAR_003160 (D73H, chain A/B, )
17: VAR_003159 (D73N, chain A/B, )
18: VAR_003161 (I75T, chain A/B, )
19: VAR_003163 (D79N, chain A/B, )
20: VAR_003165 (D80N, chain A/B, )
21: VAR_003164 (D80Y, chain A/B, )
22: VAR_003168 (H97R, chain A/B, )
23: VAR_003173 (E121K, chain A/B, )
24: VAR_003175 (A128T, chain A/B, )
25: VAR_003177 (V134M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003124
H
3
Q
HBG1_HUMAN
Polymorphism
35315638
A/B
H
2
Q
02
UniProt
VAR_003125
E
6
K
HBG1_HUMAN
Polymorphism
34427034
A/B
E
5
K
03
UniProt
VAR_003127
E
7
G
HBG1_HUMAN
Polymorphism
34432567
A/B
E
6
G
04
UniProt
VAR_003128
E
7
Q
HBG1_HUMAN
Polymorphism
33924825
A/B
E
6
Q
05
UniProt
VAR_003130
T
13
R
HBG1_HUMAN
Polymorphism
33992775
A/B
T
12
R
06
UniProt
VAR_003135
D
23
G
HBG1_HUMAN
Polymorphism
33970907
A/B
D
22
G
07
UniProt
VAR_003138
G
26
R
HBG1_HUMAN
Polymorphism
35957832
A/B
G
25
R
08
UniProt
VAR_003141
P
37
R
HBG1_HUMAN
Polymorphism
41404150
A/B
P
36
R
09
UniProt
VAR_003142
W
38
G
HBG1_HUMAN
Polymorphism
35700518
A/B
W
37
G
10
UniProt
VAR_003143
Q
40
R
HBG1_HUMAN
Polymorphism
35977759
A/B
Q
39
R
11
UniProt
VAR_003145
R
41
K
HBG1_HUMAN
Polymorphism
33974602
A/B
R
40
K
12
UniProt
VAR_003147
D
44
N
HBG1_HUMAN
Polymorphism
41475844
A/B
D
43
N
13
UniProt
VAR_003149
A
54
D
HBG1_HUMAN
Polymorphism
35746147
A/B
A
53
D
14
UniProt
VAR_003153
K
62
E
HBG1_HUMAN
Polymorphism
34747494
A/B
K
61
E
15
UniProt
VAR_003158
G
73
R
HBG1_HUMAN
Unclassified
---
A/B
G
72
R
16
UniProt
VAR_003160
D
74
H
HBG1_HUMAN
Unclassified
---
A/B
D
73
H
17
UniProt
VAR_003159
D
74
N
HBG1_HUMAN
Unclassified
---
A/B
D
73
N
18
UniProt
VAR_003161
I
76
T
HBG1_HUMAN
Polymorphism
1061234
A/B
I
75
T
19
UniProt
VAR_003163
D
80
N
HBG1_HUMAN
Unclassified
---
A/B
D
79
N
20
UniProt
VAR_003165
D
81
N
HBG1_HUMAN
Unclassified
---
A/B
D
80
N
21
UniProt
VAR_003164
D
81
Y
HBG1_HUMAN
Unclassified
---
A/B
D
80
Y
22
UniProt
VAR_003168
H
98
R
HBG1_HUMAN
Unclassified
---
A/B
H
97
R
23
UniProt
VAR_003173
E
122
K
HBG1_HUMAN
Unclassified
---
A/B
E
121
K
24
UniProt
VAR_003175
A
129
T
HBG1_HUMAN
Unclassified
---
A/B
A
128
T
25
UniProt
VAR_003177
V
135
M
HBG1_HUMAN
Unclassified
---
A/B
V
134
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:1-146,B:1-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBG1_HUMAN
2-147
2
A:1-146
B:1-146
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1i3da_ (A:)
1b: SCOP_d1i3db_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, beta-chain
(292)
Human fetus (Homo sapiens), gamma-chain [TaxId: 9606]
(3)
1a
d1i3da_
A:
1b
d1i3db_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1i3dA00 (A:1-146)
1b: CATH_1i3dB00 (B:1-146)
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(
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Human (Homo sapiens)
(198)
1a
1i3dA00
A:1-146
1b
1i3dB00
B:1-146
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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