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Getting 'Biological Unit' information from database.
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1I1C
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
NON-FCRN BINDING FC FRAGMENT OF RAT IGG2A
Authors
:
W. L. Martin, A. P. West Jr. , L. Gan, P. J. Bjorkman
Date
:
31 Jan 01 (Deposition) - 14 Feb 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Igg, Fc, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. L. Martin, A. P. West Jr. , L. Gan, P. J. Bjorkman
Crystal Structure At 2. 8 A Of An Fcrn/Heterodimeric Fc Complex: Mechanism Of Ph-Dependent Binding.
Mol. Cell V. 7 867 2001
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
FUL A:102 , NAG A:103 , VAL A:264 , ASP A:265 , GLN A:295 , ASN A:297 , THR A:299
BINDING SITE FOR RESIDUE NAG A 101
02
AC2
SOFTWARE
NAG A:101 , NAG A:103
BINDING SITE FOR RESIDUE FUL A 102
03
AC3
SOFTWARE
NAG A:101 , FUL A:102 , BMA A:104 , MAN A:105 , PHE A:241 , VAL A:264 , ARG A:301
BINDING SITE FOR RESIDUE NAG A 103
04
AC4
SOFTWARE
NAG A:103 , MAN A:105 , MAN A:108 , PHE A:243
BINDING SITE FOR RESIDUE BMA A 104
05
AC5
SOFTWARE
NAG A:103 , BMA A:104 , NAG A:106 , PHE A:243
BINDING SITE FOR RESIDUE MAN A 105
06
AC6
SOFTWARE
MAN A:105 , LYS A:246
BINDING SITE FOR RESIDUE NAG A 106
07
AC7
SOFTWARE
BMA A:104 , NAG A:109 , NAG B:201 , FUC B:202 , NAG B:203
BINDING SITE FOR RESIDUE MAN A 108
08
AC8
SOFTWARE
MAN A:108 , FUC B:202
BINDING SITE FOR RESIDUE NAG A 109
09
AC9
SOFTWARE
MAN A:108 , FUC B:202 , NAG B:203 , VAL B:264 , ASP B:265 , GLN B:295 , ASN B:297 , THR B:299
BINDING SITE FOR RESIDUE NAG B 201
10
BC1
SOFTWARE
MAN A:108 , NAG A:109 , NAG B:201 , NAG B:203
BINDING SITE FOR RESIDUE FUC B 202
11
BC2
SOFTWARE
MAN A:108 , NAG B:201 , FUC B:202 , BMA B:204 , MAN B:205 , PHE B:241 , VAL B:262 , VAL B:264 , ARG B:301
BINDING SITE FOR RESIDUE NAG B 203
12
BC3
SOFTWARE
NAG B:203 , MAN B:205 , MAN B:208 , PHE B:243
BINDING SITE FOR RESIDUE BMA B 204
13
BC4
SOFTWARE
NAG B:203 , BMA B:204 , NAG B:206 , PHE B:243
BINDING SITE FOR RESIDUE MAN B 205
14
BC5
SOFTWARE
MAN B:205 , PHE B:243 , LYS B:246 , VAL B:262
BINDING SITE FOR RESIDUE NAG B 206
15
BC6
SOFTWARE
BMA B:204 , NAG B:209
BINDING SITE FOR RESIDUE MAN B 208
16
BC7
SOFTWARE
MAN B:208
BINDING SITE FOR RESIDUE NAG B 209
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1i1ca1 (A:239-341)
1b: SCOP_d1i1cb1 (B:239-341)
2a: SCOP_d1i1ca2 (A:342-443)
2b: SCOP_d1i1cb2 (B:342-443)
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(
)
(
)
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(
)
(
)
Superfamilies
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1i1ca1
A:239-341
1b
d1i1cb1
B:239-341
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
2a
d1i1ca2
A:342-443
2b
d1i1cb2
B:342-443
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1i1cA02 (A:338-443)
1b: CATH_1i1cB02 (B:338-443)
1c: CATH_1i1cA01 (A:239-337)
1d: CATH_1i1cB01 (B:239-337)
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(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Norway rat (Rattus norvegicus)
(32)
1a
1i1cA02
A:338-443
1b
1i1cB02
B:338-443
1c
1i1cA01
A:239-337
1d
1i1cB01
B:239-337
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (78 KB)
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