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1I19
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHOLESTEROL OXIDASE FROM B.STEROLICUM
Authors
:
R. Coulombe, K. Q. Yue, S. Ghisla, A. Vrielink
Date
:
31 Jan 01 (Deposition) - 08 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Mix Alpha Beta, Covalent Fad, Flavoenzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Coulombe, K. Q. Yue, S. Ghisla, A. Vrielink
Oxygen Access To The Active Site Of Cholesterol Oxidase Through A Narrow Channel Is Gated By An Arg-Glu Pair.
J. Biol. Chem. V. 276 30435 2001
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 18)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAC
1
Ligand/Ion
CACODYLATE ION
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
MN
3
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:542 , GLU B:579 , CAC B:703 , HOH B:1862 , HOH B:1863 , HOH B:1872
BINDING SITE FOR RESIDUE MN B 702
02
AC2
SOFTWARE
HIS A:108 , GLU A:109 , ASP A:111 , HOH A:1193 , ASN B:542 , ASN B:543 , GLU B:579 , MN B:702
BINDING SITE FOR RESIDUE CAC B 703
03
AC3
SOFTWARE
HOH B:1480 , HOH B:1875 , HOH B:1898 , HOH B:1924 , HOH B:1925
BINDING SITE FOR RESIDUE MN B 704
04
AC4
SOFTWARE
ASP B:545 , HOH B:1984 , HOH B:1985 , HOH B:1986
BINDING SITE FOR RESIDUE MN B 705
05
AC5
SOFTWARE
ILE A:423 , GLU A:432 , GLU A:475 , ARG A:477 , LYS A:554 , FAD A:700 , HOH A:1001 , HOH A:1002 , EDO A:3002
BINDING SITE FOR RESIDUE EDO A 3001
06
AC6
SOFTWARE
TRP A:123 , ILE A:423 , LEU A:430 , GLU A:432 , LEU A:518 , EDO A:3001
BINDING SITE FOR RESIDUE EDO A 3002
07
AC7
SOFTWARE
PRO A:125 , GLU A:129 , TYR A:563 , HOH A:1382 , HOH A:1825
BINDING SITE FOR RESIDUE EDO A 3003
08
AC8
SOFTWARE
GLU A:83 , PRO A:562 , TYR A:563 , HOH A:1293 , HOH A:1362 , HOH A:1382 , HOH A:2001
BINDING SITE FOR RESIDUE EDO A 3004
09
AC9
SOFTWARE
ASN A:595 , PRO A:599 , ARG A:601 , PRO A:613 , THR B:446 , ASP B:450
BINDING SITE FOR RESIDUE EDO A 3005
10
BC1
SOFTWARE
ILE B:423 , GLU B:432 , GLU B:475 , ARG B:477 , ASN B:516 , LYS B:554 , FAD B:701 , HOH B:1004
BINDING SITE FOR RESIDUE EDO B 3011
11
BC2
SOFTWARE
TRP B:123 , ILE B:423 , LEU B:430 , GLU B:432 , LEU B:518
BINDING SITE FOR RESIDUE EDO B 3012
12
BC3
SOFTWARE
PRO B:125 , GLU B:129 , TYR B:563 , PHE B:607 , HOH B:1320 , HOH B:1520 , HOH B:1958
BINDING SITE FOR RESIDUE EDO B 3013
13
BC4
SOFTWARE
HOH A:1629 , ILE B:578 , GLU B:579 , GLY B:580 , VAL B:581 , HOH B:1343
BINDING SITE FOR RESIDUE EDO B 3014
14
BC5
SOFTWARE
LEU B:241 , GLU B:242 , THR B:243 , HOH B:1990
BINDING SITE FOR RESIDUE EDO B 3015
15
BC6
SOFTWARE
ARG B:441 , ASP B:510 , HOH B:1518 , HOH B:1822
BINDING SITE FOR RESIDUE EDO B 3016
16
BC7
SOFTWARE
ILE B:84 , PRO B:562 , HOH B:1207 , HOH B:1300 , HOH B:1320 , HOH B:1465
BINDING SITE FOR RESIDUE EDO B 3017
17
BC8
SOFTWARE
TRP A:80 , ARG A:115 , PRO A:116 , GLY A:118 , ALA A:119 , MET A:120 , HIS A:121 , GLY A:122 , TRP A:123 , LEU A:126 , ALA A:164 , PRO A:186 , ALA A:187 , PRO A:188 , LEU A:191 , SER A:192 , GLY A:194 , GLY A:195 , ALA A:198 , ALA A:201 , HIS A:202 , ASN A:257 , LEU A:258 , GLY A:259 , CYS A:261 , LEU A:263 , ARG A:477 , HOH A:1002 , HOH A:1006 , HOH A:1027 , HOH A:1033 , HOH A:1039 , HOH A:1047 , HOH A:1055 , HOH A:1072 , EDO A:3001
BINDING SITE FOR RESIDUE FAD A 700
18
BC9
SOFTWARE
TRP B:80 , ARG B:115 , PRO B:116 , GLY B:118 , ALA B:119 , MET B:120 , HIS B:121 , GLY B:122 , TRP B:123 , LEU B:126 , ALA B:164 , PRO B:186 , ALA B:187 , PRO B:188 , LEU B:191 , SER B:192 , GLY B:194 , GLY B:195 , ALA B:198 , VAL B:199 , ALA B:201 , HIS B:202 , LEU B:258 , GLY B:259 , CYS B:261 , LEU B:263 , ARG B:477 , HOH B:1003 , HOH B:1089 , HOH B:1110 , HOH B:1116 , HOH B:1122 , HOH B:1130 , HOH B:1138 , HOH B:1153 , EDO B:3011
BINDING SITE FOR RESIDUE FAD B 701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1i19a2 (A:57-273)
1b: SCOP_d1i19b2 (B:57-273)
2a: SCOP_d1i19a1 (A:274-613)
2b: SCOP_d1i19b1 (B:274-613)
View:
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Classes
(
)
(
)
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(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
FAD-linked oxidases, N-terminal domain
(29)
Protein domain
:
Cholesterol oxidase
(1)
Brevibacterium sterolicum [TaxId: 1702]
(1)
1a
d1i19a2
A:57-273
1b
d1i19b2
B:57-273
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Cholesterol oxidase
(2)
Protein domain
:
Cholesterol oxidase
(1)
Brevibacterium sterolicum [TaxId: 1702]
(1)
2a
d1i19a1
A:274-613
2b
d1i19b1
B:274-613
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1i19A01 (A:71-146)
1b: CATH_1i19B01 (B:71-146)
2a: CATH_1i19A02 (A:147-272)
2b: CATH_1i19B02 (B:147-272)
3a: CATH_1i19B03 (B:273-563)
3b: CATH_1i19A03 (A:273-563)
4a: CATH_1i19A04 (A:564-613)
4b: CATH_1i19B04 (B:564-613)
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)
(
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2
(50)
Homologous Superfamily
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2
(50)
Brevibacterium sterolicum. Organism_taxid: 1702.
(2)
1a
1i19A01
A:71-146
1b
1i19B01
B:71-146
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Brevibacterium sterolicum. Organism_taxid: 1702.
(2)
2a
1i19A02
A:147-272
2b
1i19B02
B:147-272
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 3
(23)
Brevibacterium sterolicum. Organism_taxid: 1702.
(2)
3a
1i19B03
B:273-563
3b
1i19A03
A:273-563
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Homologous Superfamily
:
Vanillyl-alcohol Oxidase; Chain A, domain 4
(22)
Brevibacterium sterolicum. Organism_taxid: 1702.
(2)
4a
1i19A04
A:564-613
4b
1i19B04
B:564-613
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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