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1I0Z
Biol. Unit 1
Info
Asym.Unit (117 KB)
Biol.Unit 1 (219 KB)
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(1)
Title
:
HUMAN HEART L-LACTATE DEHYDROGENASE H CHAIN, TERNARY COMPLEX WITH NADH AND OXAMATE
Authors
:
J. A. Read, V. J. Winter, C. M. Eszes, R. B. Sessions, R. L. Brady
Date
:
30 Jan 01 (Deposition) - 28 Mar 01 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Dehydrogenase, Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Read, V. J. Winter, C. M. Eszes, R. B. Sessions, R. L. Brady
Structural Basis For Altered Activity Of M- And H-Isozyme Forms Of Human Lactate Dehydrogenase.
Proteins V. 43 175 2001
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
1b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2a: OXAMIC ACID (OXMa)
2b: OXAMIC ACID (OXMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAI
4
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2
OXM
4
Ligand/Ion
OXAMIC ACID
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:29 , GLN A:30 , VAL A:31 , ASP A:52 , VAL A:53 , LEU A:54 , THR A:95 , ALA A:96 , GLY A:97 , VAL A:98 , ARG A:99 , VAL A:136 , SER A:137 , ASN A:138 , SER A:161 , LEU A:165 , HIS A:193 , THR A:248 , ILE A:252 , OXM A:402 , HOH A:410 , HOH A:413 , HOH A:454 , HOH A:462 , HOH A:477 , HOH A:480 , HOH A:498 , HOH A:500 , HOH A:502 , HOH A:503 , HOH A:523 , HOH A:546
BINDING SITE FOR RESIDUE NAI A 401
2
AC2
SOFTWARE
GLN A:100 , ARG A:106 , ASN A:138 , ARG A:169 , HIS A:193 , ALA A:238 , THR A:248 , NAI A:401
BINDING SITE FOR RESIDUE OXM A 402
3
AC3
SOFTWARE
ASN A:108 , GLY B:29 , GLN B:30 , VAL B:31 , ASP B:52 , VAL B:53 , LEU B:54 , THR B:95 , ALA B:96 , GLY B:97 , VAL B:98 , ARG B:99 , ILE B:120 , VAL B:136 , ASN B:138 , SER B:161 , LEU B:165 , HIS B:193 , THR B:248 , ILE B:252 , OXM B:412 , HOH B:419 , HOH B:433 , HOH B:438 , HOH B:470 , HOH B:480 , HOH B:498 , HOH B:534
BINDING SITE FOR RESIDUE NAI B 411
4
AC4
SOFTWARE
GLN B:100 , ARG B:106 , ASN B:138 , ARG B:169 , HIS B:193 , ALA B:238 , THR B:248 , NAI B:411
BINDING SITE FOR RESIDUE OXM B 412
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SAPs(SNPs)/Variants
(12, 48)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_004173 (K6E, chain A/B, )
02: VAR_004174 (A34E, chain A/B, )
03: VAR_011634 (G68E, chain A/B, )
04: VAR_011635 (R106W, chain A/B, )
05: VAR_004175 (S128R, chain A/B, )
06: VAR_004176 (F170V, chain A/B, )
07: VAR_004177 (R171H, chain A/B, )
08: VAR_011636 (R171P, chain A/B, )
09: VAR_004178 (M174L, chain A/B, )
10: VAR_049758 (M174V, chain A/B, )
11: VAR_004179 (D321V, chain A/B, )
12: VAR_011638 (W324R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004173
K
7
E
LDHB_HUMAN
Unclassified
---
A/B
K
6
E
02
UniProt
VAR_004174
A
35
E
LDHB_HUMAN
Unclassified
---
A/B
A
34
E
03
UniProt
VAR_011634
G
69
E
LDHB_HUMAN
Unclassified
---
A/B
G
68
E
04
UniProt
VAR_011635
R
107
W
LDHB_HUMAN
Unclassified
---
A/B
R
106
W
05
UniProt
VAR_004175
S
129
R
LDHB_HUMAN
Unclassified
---
A/B
S
128
R
06
UniProt
VAR_004176
F
171
V
LDHB_HUMAN
Unclassified
---
A/B
F
170
V
07
UniProt
VAR_004177
R
172
H
LDHB_HUMAN
Unclassified
---
A/B
R
171
H
08
UniProt
VAR_011636
R
172
P
LDHB_HUMAN
Unclassified
---
A/B
R
171
P
09
UniProt
VAR_004178
M
175
L
LDHB_HUMAN
Unclassified
---
A/B
M
174
L
10
UniProt
VAR_049758
M
175
V
LDHB_HUMAN
Polymorphism
7966339
A/B
M
174
V
11
UniProt
VAR_004179
D
322
V
LDHB_HUMAN
Unclassified
---
A/B
D
321
V
12
UniProt
VAR_011638
W
325
R
LDHB_HUMAN
Unclassified
---
A/B
W
324
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: L_LDH (A:190-196,B:190-196)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
L_LDH
PS00064
L-lactate dehydrogenase active site.
LDHB_HUMAN
191-197
4
A:190-196
B:190-196
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1i0za2 (A:161-332)
1b: SCOP_d1i0zb2 (B:161-332)
2a: SCOP_d1i0za1 (A:1-160)
2b: SCOP_d1i0zb1 (B:1-160)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Lactate dehydrogenase
(55)
Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
(2)
1a
d1i0za2
A:161-332
1b
d1i0zb2
B:161-332
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Lactate dehydrogenase
(53)
Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
(2)
2a
d1i0za1
A:1-160
2b
d1i0zb1
B:1-160
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1i0zA01 (A:15-162)
1b: CATH_1i0zB01 (B:15-162)
2a: CATH_1i0zA02 (A:163-330)
2b: CATH_1i0zB02 (B:163-330)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1i0zA01
A:15-162
1b
1i0zB01
B:15-162
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Human (Homo sapiens)
(4)
2a
1i0zA02
A:163-330
2b
1i0zB02
B:163-330
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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