PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1HZP
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (103 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE MYOBACTERIUM TUBERCULOSIS BETA-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III
Authors
:
J. N. Scarsdale, G. Kazanina, X. He, K. A. Reynolds, H. T. Wright, Tb Str Genomics Consortium (Tbsgc)
Date
:
25 Jan 01 (Deposition) - 13 Jun 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fatty Acid Biosynthesis, Myobacterium Tuberculosis, Structural Basis For Substrate Specificity, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. N. Scarsdale, G. Kazanina, X. He, K. A. Reynolds, H. T. Wright
Crystal Structure Of The Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
J. Biol. Chem. V. 276 20516 2001
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: LAURIC ACID (DAOa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DAO
1
Ligand/Ion
LAURIC ACID
2
GOL
7
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:112 , ILE A:189 , LEU A:207 , GLY A:209 , VAL A:212 , HIS A:244 , ALA A:246 , ASN A:274 , TYR A:304 , GLY A:305
BINDING SITE FOR RESIDUE DAO A 408
2
AC2
SOFTWARE
ASP A:222 , ARG A:225 , ARG A:226 , HOH A:652 , HOH A:835
BINDING SITE FOR RESIDUE GOL A 400
3
AC3
SOFTWARE
ALA A:10 , ARG A:12 , ALA A:285 , GLU A:286 , THR A:289 , HOH A:557 , HOH A:590
BINDING SITE FOR RESIDUE GOL A 401
4
AC4
SOFTWARE
TYR A:34 , GLY A:38 , SER A:248 , GLU A:252
BINDING SITE FOR RESIDUE GOL A 402
5
AC5
SOFTWARE
VAL A:255 , LEU A:260 , ARG A:261 , PRO A:262 , ALA A:263A , VAL A:265
BINDING SITE FOR RESIDUE GOL A 403
6
AC6
SOFTWARE
HOH A:557 , HOH A:775 , HOH A:856
BINDING SITE FOR RESIDUE GOL A 404
7
AC7
SOFTWARE
LEU B:207 , GLY B:209 , ALA B:246 , ASN B:274 , HOH B:742
BINDING SITE FOR RESIDUE GOL B 406
8
AC8
SOFTWARE
ASP A:48 , SER A:50 , HOH A:573 , HOH A:714 , HOH A:888 , ASP B:194
BINDING SITE FOR RESIDUE GOL A 407
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1hzpa1 (A:-10-174)
1b: SCOP_d1hzpa2 (A:175-317)
1c: SCOP_d1hzpb1 (B:-10-174)
1d: SCOP_d1hzpb2 (B:175-317)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Chalcone synthase-like
(56)
Protein domain
:
Ketoacyl-ACP synthase III (FabH)
(22)
Mycobacterium tuberculosis [TaxId: 1773]
(12)
1a
d1hzpa1
A:-10-174
1b
d1hzpa2
A:175-317
1c
d1hzpb1
B:-10-174
1d
d1hzpb2
B:175-317
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1hzpA01 (A:-10-172)
1b: CATH_1hzpB01 (B:-10-172)
1c: CATH_1hzpA02 (A:173-317)
1d: CATH_1hzpB02 (B:173-317)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(1)
1a
1hzpA01
A:-10-172
1b
1hzpB01
B:-10-172
1c
1hzpA02
A:173-317
1d
1hzpB02
B:173-317
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (108 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1HZP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
