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1HYU
Asym. Unit
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Asym.Unit (94 KB)
Biol.Unit 1 (177 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INTACT AHPF
Authors
:
Z. A. Wood, L. B. Poole, P. A. Karplus
Date
:
22 Jan 01 (Deposition) - 14 Feb 01 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Thiol-Thiolate Hydrogen Bond, Nucleotide Binding Fold, Thioredoxin Reductase, Thioredoxin, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Z. A. Wood, L. B. Poole, P. A. Karplus
Structure Of Intact Ahpf Reveals A Mirrored Thioredoxin-Lik Active Site And Implies Large Domain Rotations During Catalysis.
Biochemistry V. 40 3900 2001
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:430 , ARG A:432
BINDING SITE FOR RESIDUE SO4 A 800
2
AC2
SOFTWARE
LYS A:179 , ILE A:437 , HIS A:438 , SER A:439
BINDING SITE FOR RESIDUE SO4 A 801
3
AC3
SOFTWARE
ASN A:257 , HIS A:347 , CYS A:348 , GLN A:496 , FAD A:700
BINDING SITE FOR RESIDUE CL A 900
4
AC4
SOFTWARE
GLY A:219 , GLY A:221 , PRO A:222 , ALA A:223 , GLU A:243 , ARG A:244 , GLY A:247 , GLN A:248 , ASN A:257 , GLN A:288 , SER A:289 , ALA A:290 , ALA A:321 , THR A:322 , GLY A:323 , CYS A:345 , GLY A:487 , ASP A:488 , LYS A:495 , GLN A:496 , ILE A:497 , ALA A:500 , CL A:900 , HOH A:905 , HOH A:907 , HOH A:909 , HOH A:910 , HOH A:913 , HOH A:925 , HOH A:940 , HOH A:956 , HOH A:987 , HOH A:1071
BINDING SITE FOR RESIDUE FAD A 700
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_2 (A:109-208)
2: PYRIDINE_REDOX_2 (A:345-365)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_2
PS51354
Glutaredoxin domain profile.
AHPF_SALTY
109-208
1
A:109-208
2
PYRIDINE_REDOX_2
PS00573
Pyridine nucleotide-disulphide oxidoreductases class-II active site.
AHPF_SALTY
345-365
1
A:345-365
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hyua1 (A:199-325,A:452-521)
1b: SCOP_d1hyua2 (A:326-451)
2a: SCOP_d1hyua3 (A:1-102)
2b: SCOP_d1hyua4 (A:103-198)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
(2)
Salmonella typhimurium [TaxId: 90371]
(1)
1a
d1hyua1
A:199-325,A:452-521
1b
d1hyua2
A:326-451
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
PDI-like
(13)
Protein domain
:
Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
(3)
Salmonella typhimurium [TaxId: 90371]
(3)
2a
d1hyua3
A:1-102
2b
d1hyua4
A:103-198
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1hyuA02 (A:103-197)
1b: CATH_1hyuA04 (A:1-94)
2a: CATH_1hyuA01 (A:212-324,A:453-521)
2b: CATH_1hyuA03 (A:327-449)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Salmonella typhimurium. Organism_taxid: 602.
(1)
1a
1hyuA02
A:103-197
1b
1hyuA04
A:1-94
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Salmonella typhimurium. Organism_taxid: 602.
(1)
2a
1hyuA01
A:212-324,A:453-521
2b
1hyuA03
A:327-449
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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