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1HY7
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (34 KB)
Biol.Unit 3 (63 KB)
Biol.Unit 4 (62 KB)
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(1)
Title
:
A CARBOXYLIC ACID BASED INHIBITOR IN COMPLEX WITH MMP3
Authors
:
M. G. Natchus, R. G. Bookland, M. J. Laufersweiler, S. Pikul, N. G. Almst M. J. Janusz, L. C. Hsieh, F. Gu, M. E. Pokross, V. S. Patel, S. M. Garver, T. M. Branch, S. L. King, T. R. Baker, D. J. Foltz, G. E. Mieling
Date
:
18 Jan 01 (Deposition) - 18 Jan 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Keywords
:
Mixed Alpha Beta Structure, Zinc Protease, Inhibited, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Natchus, R. G. Bookland, M. J. Laufersweiler, S. Pikul, N. G. Almstead, B. De, M. J. Janusz, L. C. Hsieh, F. Gu, M. E. Pokross, V. S. Patel, S. M. Garver, S. X. Peng, T. M. Branch, S. L. King, T. R. Baker D. J. Foltz, G. E. Mieling
Development Of New Carboxylic Acid-Based Mmp Inhibitors Derived From Functionalized Propargylglycines.
J. Med. Chem. V. 44 1060 2001
[
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4... (MBSa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
MBS
1
Ligand/Ion
R-2-{[4'-METHOXY-(1,1'-BIPHENYL)-4-YL]-SULFONYL}-AMINO-6-METHOXY-HEX-4-YNOIC ACID
3
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:201 , HIS A:205 , HIS A:211 , HOH A:379 , THR B:755
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 303
04
AC4
SOFTWARE
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:326 , HOH A:341
BINDING SITE FOR RESIDUE CA A 304
05
AC5
SOFTWARE
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:306 , HOH A:307
BINDING SITE FOR RESIDUE CA A 305
06
AC6
SOFTWARE
HIS B:701 , HIS B:705 , HIS B:711 , MBS B:901
BINDING SITE FOR RESIDUE ZN B 801
07
AC7
SOFTWARE
HIS B:651 , ASP B:653 , HIS B:666 , HIS B:679
BINDING SITE FOR RESIDUE ZN B 802
08
AC8
SOFTWARE
ASP B:658 , GLY B:659 , GLY B:661 , VAL B:663 , ASP B:681 , GLU B:684
BINDING SITE FOR RESIDUE CA B 803
09
AC9
SOFTWARE
HOH B:20 , HOH B:52 , ASP B:607 , ASP B:682 , GLU B:684
BINDING SITE FOR RESIDUE CA B 804
10
BC1
SOFTWARE
HOH B:12 , HOH B:64 , ASP B:641 , GLY B:673 , ASN B:675 , ASP B:677
BINDING SITE FOR RESIDUE CA B 805
11
BC2
SOFTWARE
HOH B:76 , HOH B:109 , HOH B:221 , VAL B:663 , LEU B:664 , ALA B:665 , HIS B:666 , LEU B:697 , HIS B:701 , GLU B:702 , HIS B:705 , HIS B:711 , LEU B:718 , TYR B:720 , PRO B:721 , LEU B:722 , ZN B:801
BINDING SITE FOR RESIDUE MBS B 901
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:198-207,B:698-707)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
2
A:198-207
B:698-707
[
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Exons
(5, 10)
Info
All Exons
Exon 1.2 (A:83-100 | B:583-600)
Exon 1.3 (A:100-150 | B:600-650)
Exon 1.4b (A:150-192 | B:650-692)
Exon 1.5 (A:192-247 (gaps) | B:692-747 (gaps...)
Exon 1.6 (A:247-250 | B:747-755)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000299855
1a
ENSE00002171374
chr11:
102714534-102714173
362
MMP3_HUMAN
1-35
35
0
-
-
1.2
ENST00000299855
2
ENSE00001105428
chr11:
102713647-102713403
245
MMP3_HUMAN
36-117
82
2
A:83-100
B:583-600
18
18
1.3
ENST00000299855
3
ENSE00001642002
chr11:
102713310-102713162
149
MMP3_HUMAN
117-167
51
2
A:100-150
B:600-650
51
51
1.4b
ENST00000299855
4b
ENSE00001105420
chr11:
102713010-102712885
126
MMP3_HUMAN
167-209
43
2
A:150-192
B:650-692
43
43
1.5
ENST00000299855
5
ENSE00001657829
chr11:
102711324-102711160
165
MMP3_HUMAN
209-264
56
2
A:192-247 (gaps)
B:692-747 (gaps)
56
56
1.6
ENST00000299855
6
ENSE00001105427
chr11:
102710983-102710839
145
MMP3_HUMAN
264-312
49
2
A:247-250
B:747-755
4
9
1.7
ENST00000299855
7
ENSE00001105439
chr11:
102709974-102709841
134
MMP3_HUMAN
312-357
46
0
-
-
1.8
ENST00000299855
8
ENSE00001801971
chr11:
102709441-102709282
160
MMP3_HUMAN
357-410
54
0
-
-
1.9
ENST00000299855
9
ENSE00001105448
chr11:
102708132-102708029
104
MMP3_HUMAN
410-445
36
0
-
-
1.11
ENST00000299855
11
ENSE00001292630
chr11:
102706957-102706532
426
MMP3_HUMAN
445-477
33
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1hy7a_ (A:)
1b: SCOP_d1hy7b_ (B:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1hy7a_
A:
1b
d1hy7b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1hy7B00 (B:583-755)
1b: CATH_1hy7A00 (A:83-250)
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Classes
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1hy7B00
B:583-755
1b
1hy7A00
A:83-250
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain B
Asymmetric Unit 1
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Asym.Unit (69 KB)
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Biol.Unit 3 (63 KB)
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