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1HXM
Asym. Unit
Info
Asym.Unit (290 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (76 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (76 KB)
Biol.Unit 5 (145 KB)
Biol.Unit 6 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HUMAN VGAMMA9/VDELTA2 T CELL RECEPTOR
Authors
:
T. J. Allison, C. C. Winter, J. J. Fournie, M. Bonneville, D. N. Garboczi
Date
:
16 Jan 01 (Deposition) - 20 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.12
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,E,F (1x)
Biol. Unit 6: C,D,G,H (1x)
Keywords
:
Ig Domain, T Cell Receptor, Tcr, Gdtcr, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. J. Allison, C. C. Winter, J. J. Fournie, M. Bonneville, D. N. Garboczi
Structure Of A Human Gammadelta T-Cell Antigen Receptor.
Nature V. 411 820 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS F:60 , SER F:66 , GLY F:67
BINDING SITE FOR RESIDUE SO4 F 1001
2
AC2
SOFTWARE
LYS D:60 , SER D:66 , GLY D:67
BINDING SITE FOR RESIDUE SO4 D 1002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1hxmb2 (B:124-230)
1b: SCOP_d1hxmd2 (D:124-230)
1c: SCOP_d1hxmf2 (F:124-230)
1d: SCOP_d1hxmh2 (H:124-230)
2a: SCOP_d1hxma2 (A:121-206)
2b: SCOP_d1hxmc2 (C:121-206)
2c: SCOP_d1hxme2 (E:121-206)
2d: SCOP_d1hxmg2 (G:121-206)
3a: SCOP_d1hxmb1 (B:1-123)
3b: SCOP_d1hxmd1 (D:1-123)
3c: SCOP_d1hxmf1 (F:1-123)
3d: SCOP_d1hxmh1 (H:1-123)
4a: SCOP_d1hxma1 (A:1-120)
4b: SCOP_d1hxmc1 (C:1-120)
4c: SCOP_d1hxme1 (E:1-120)
4d: SCOP_d1hxmg1 (G:1-120)
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Protein Domains
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)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
T-cell antigen receptor
(81)
Human (Homo sapiens), delta-chain [TaxId: 9606]
(2)
1a
d1hxmb2
B:124-230
1b
d1hxmd2
D:124-230
1c
d1hxmf2
F:124-230
1d
d1hxmh2
H:124-230
Human (Homo sapiens), gamma-chain [TaxId: 9606]
(2)
2a
d1hxma2
A:121-206
2b
d1hxmc2
C:121-206
2c
d1hxme2
E:121-206
2d
d1hxmg2
G:121-206
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Human (Homo sapiens), delta-chain [TaxId: 9606]
(3)
3a
d1hxmb1
B:1-123
3b
d1hxmd1
D:1-123
3c
d1hxmf1
F:1-123
3d
d1hxmh1
H:1-123
Human (Homo sapiens), gamma-chain [TaxId: 9606]
(3)
4a
d1hxma1
A:1-120
4b
d1hxmc1
C:1-120
4c
d1hxme1
E:1-120
4d
d1hxmg1
G:1-120
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1hxmB02 (B:126-230)
1b: CATH_1hxmD02 (D:126-230)
1c: CATH_1hxmF02 (F:126-230)
1d: CATH_1hxmH02 (H:126-230)
1e: CATH_1hxmA01 (A:1-121)
1f: CATH_1hxmC01 (C:1-121)
1g: CATH_1hxmE01 (E:1-121)
1h: CATH_1hxmG01 (G:1-121)
1i: CATH_1hxmB01 (B:1-125)
1j: CATH_1hxmD01 (D:1-125)
1k: CATH_1hxmF01 (F:1-125)
1l: CATH_1hxmH01 (H:1-125)
1m: CATH_1hxmA02 (A:122-206)
1n: CATH_1hxmC02 (C:122-206)
1o: CATH_1hxmE02 (E:122-206)
1p: CATH_1hxmG02 (G:122-206)
View:
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1hxmB02
B:126-230
1b
1hxmD02
D:126-230
1c
1hxmF02
F:126-230
1d
1hxmH02
H:126-230
1e
1hxmA01
A:1-121
1f
1hxmC01
C:1-121
1g
1hxmE01
E:1-121
1h
1hxmG01
G:1-121
1i
1hxmB01
B:1-125
1j
1hxmD01
D:1-125
1k
1hxmF01
F:1-125
1l
1hxmH01
H:1-125
1m
1hxmA02
A:122-206
1n
1hxmC02
C:122-206
1o
1hxmE02
E:122-206
1p
1hxmG02
G:122-206
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (76 KB)
Header - Biol.Unit 4
Biol.Unit 5 (145 KB)
Header - Biol.Unit 5
Biol.Unit 6 (145 KB)
Header - Biol.Unit 6
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