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1HXB
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
HIV-1 PROTEINASE COMPLEXED WITH RO 31-8959
Authors
:
B. J. Graves, M. H. Hatada, R. L. Crowther
Date
:
13 Sep 96 (Deposition) - 12 Mar 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Aspartyl Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Krohn, S. Redshaw, J. C. Ritchie, B. J. Graves, M. H. Hatada
Novel Binding Mode Of Highly Potent Hiv-Proteinase Inhibitors Incorporating The (R)-Hydroxyethylamine Isostere
J. Med. Chem. V. 34 3340 1991
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)... (ROCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ROC
1
Ligand/Ion
(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:8 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , ILE A:47 , GLY A:48 , GLY A:49 , ILE A:50 , THR A:80 , PRO A:81 , VAL A:82 , ILE A:84 , HOH A:160 , HOH A:161 , ARG B:8 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , ILE B:47 , GLY B:48 , GLY B:49 , ILE B:50 , PRO B:81 , VAL B:82 , ILE B:84
BINDING SITE FOR RESIDUE ROC A 100
[
close Site info
]
SAPs(SNPs)/Variants
(68, 136)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_POL_HV1H2_001 (R8K, chain A/B, )
02: VAR_POL_HV1H2_002 (R8Q, chain A/B, )
03: VAR_POL_HV1H2_003 (L10F, chain A/B, )
04: VAR_POL_HV1H2_004 (L10I, chain A/B, )
05: VAR_POL_HV1H2_005 (L10R, chain A/B, )
06: VAR_POL_HV1H2_006 (L10V, chain A/B, )
07: VAR_POL_HV1H2_007 (L10Y, chain A/B, )
08: VAR_POL_HV1H2_008 (I15V, chain A/B, )
09: VAR_POL_HV1H2_009 (G16E, chain A/B, )
10: VAR_POL_HV1H2_010 (K20I, chain A/B, )
11: VAR_POL_HV1H2_011 (K20M, chain A/B, )
12: VAR_POL_HV1H2_012 (K20R, chain A/B, )
13: VAR_POL_HV1H2_013 (L23I, chain A/B, )
14: VAR_POL_HV1H2_014 (L24I, chain A/B, )
15: VAR_POL_HV1H2_015 (D30N, chain A/B, )
16: VAR_POL_HV1H2_016 (V32I, chain A/B, )
17: VAR_POL_HV1H2_017 (L33F, chain A/B, )
18: VAR_POL_HV1H2_018 (E34Q, chain A/B, )
19: VAR_POL_HV1H2_019 (E35D, chain A/B, )
20: VAR_POL_HV1H2_020 (M36I, chain A/B, )
21: VAR_POL_HV1H2_021 (M36L, chain A/B, )
22: VAR_POL_HV1H2_022 (S37D, chain A/B, )
23: VAR_POL_HV1H2_023 (R41K, chain A/B, )
24: VAR_POL_HV1H2_024 (K45I, chain A/B, )
25: VAR_POL_HV1H2_025 (M46F, chain A/B, )
26: VAR_POL_HV1H2_026 (M46I, chain A/B, )
27: VAR_POL_HV1H2_027 (M46L, chain A/B, )
28: VAR_POL_HV1H2_028 (I47V, chain A/B, )
29: VAR_POL_HV1H2_029 (G48V, chain A/B, )
30: VAR_POL_HV1H2_030 (I50L, chain A/B, )
31: VAR_POL_HV1H2_031 (I50V, chain A/B, )
32: VAR_POL_HV1H2_032 (F53L, chain A/B, )
33: VAR_POL_HV1H2_033 (F53Y, chain A/B, )
34: VAR_POL_HV1H2_034 (I54A, chain A/B, )
35: VAR_POL_HV1H2_035 (I54L, chain A/B, )
36: VAR_POL_HV1H2_036 (I54M, chain A/B, )
37: VAR_POL_HV1H2_037 (I54S, chain A/B, )
38: VAR_POL_HV1H2_038 (I54T, chain A/B, )
39: VAR_POL_HV1H2_039 (I54V, chain A/B, )
40: VAR_POL_HV1H2_040 (K55R, chain A/B, )
41: VAR_POL_HV1H2_041 (R57K, chain A/B, )
42: VAR_POL_HV1H2_042 (Q58E, chain A/B, )
43: VAR_POL_HV1H2_043 (D60E, chain A/B, )
44: VAR_POL_HV1H2_044 (Q61H, chain A/B, )
45: VAR_POL_HV1H2_045 (L63P, chain A/B, )
46: VAR_POL_HV1H2_046 (L63T, chain A/B, )
47: VAR_POL_HV1H2_047 (E65Q, chain A/B, )
48: VAR_POL_HV1H2_048 (I66F, chain A/B, )
49: VAR_POL_HV1H2_049 (H69Y, chain A/B, )
50: VAR_POL_HV1H2_050 (A71I, chain A/B, )
51: VAR_POL_HV1H2_051 (A71L, chain A/B, )
52: VAR_POL_HV1H2_052 (A71T, chain A/B, )
53: VAR_POL_HV1H2_053 (A71V, chain A/B, )
54: VAR_POL_HV1H2_054 (G73S, chain A/B, )
55: VAR_POL_HV1H2_055 (V77I, chain A/B, )
56: VAR_POL_HV1H2_056 (V82A, chain A/B, )
57: VAR_POL_HV1H2_057 (V82F, chain A/B, )
58: VAR_POL_HV1H2_058 (V82I, chain A/B, )
59: VAR_POL_HV1H2_059 (V82S, chain A/B, )
60: VAR_POL_HV1H2_060 (V82T, chain A/B, )
61: VAR_POL_HV1H2_061 (I84A, chain A/B, )
62: VAR_POL_HV1H2_062 (I84V, chain A/B, )
63: VAR_POL_HV1H2_063 (N88D, chain A/B, )
64: VAR_POL_HV1H2_064 (N88S, chain A/B, )
65: VAR_POL_HV1H2_065 (L89M, chain A/B, )
66: VAR_POL_HV1H2_066 (L90M, chain A/B, )
67: VAR_POL_HV1H2_067 (T91S, chain A/B, )
68: VAR_POL_HV1H2_068 (I93L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_POL_HV1H2_001
*
R
496
K
POL_HV1H2
---
---
A/B
R
8
K
02
UniProt
VAR_POL_HV1H2_002
*
R
496
Q
POL_HV1H2
---
---
A/B
R
8
Q
03
UniProt
VAR_POL_HV1H2_003
*
L
498
F
POL_HV1H2
---
---
A/B
L
10
F
04
UniProt
VAR_POL_HV1H2_004
*
L
498
I
POL_HV1H2
---
---
A/B
L
10
I
05
UniProt
VAR_POL_HV1H2_005
*
L
498
R
POL_HV1H2
---
---
A/B
L
10
R
06
UniProt
VAR_POL_HV1H2_006
*
L
498
V
POL_HV1H2
---
---
A/B
L
10
V
07
UniProt
VAR_POL_HV1H2_007
*
L
498
Y
POL_HV1H2
---
---
A/B
L
10
Y
08
UniProt
VAR_POL_HV1H2_008
*
I
503
V
POL_HV1H2
---
---
A/B
I
15
V
09
UniProt
VAR_POL_HV1H2_009
*
G
504
E
POL_HV1H2
---
---
A/B
G
16
E
10
UniProt
VAR_POL_HV1H2_010
*
K
508
I
POL_HV1H2
---
---
A/B
K
20
I
11
UniProt
VAR_POL_HV1H2_011
*
K
508
M
POL_HV1H2
---
---
A/B
K
20
M
12
UniProt
VAR_POL_HV1H2_012
*
K
508
R
POL_HV1H2
---
---
A/B
K
20
R
13
UniProt
VAR_POL_HV1H2_013
*
L
511
I
POL_HV1H2
---
---
A/B
L
23
I
14
UniProt
VAR_POL_HV1H2_014
*
L
512
I
POL_HV1H2
---
---
A/B
L
24
I
15
UniProt
VAR_POL_HV1H2_015
*
D
518
N
POL_HV1H2
---
---
A/B
D
30
N
16
UniProt
VAR_POL_HV1H2_016
*
V
520
I
POL_HV1H2
---
---
A/B
V
32
I
17
UniProt
VAR_POL_HV1H2_017
*
L
521
F
POL_HV1H2
---
---
A/B
L
33
F
18
UniProt
VAR_POL_HV1H2_018
*
E
522
Q
POL_HV1H2
---
---
A/B
E
34
Q
19
UniProt
VAR_POL_HV1H2_019
*
E
523
D
POL_HV1H2
---
---
A/B
E
35
D
20
UniProt
VAR_POL_HV1H2_020
*
M
524
I
POL_HV1H2
---
---
A/B
M
36
I
21
UniProt
VAR_POL_HV1H2_021
*
M
524
L
POL_HV1H2
---
---
A/B
M
36
L
22
UniProt
VAR_POL_HV1H2_022
*
S
525
D
POL_HV1H2
---
---
A/B
S
37
D
23
UniProt
VAR_POL_HV1H2_023
*
R
529
K
POL_HV1H2
---
---
A/B
R
41
K
24
UniProt
VAR_POL_HV1H2_024
*
K
533
I
POL_HV1H2
---
---
A/B
K
45
I
25
UniProt
VAR_POL_HV1H2_025
*
M
534
F
POL_HV1H2
---
---
A/B
M
46
F
26
UniProt
VAR_POL_HV1H2_026
*
M
534
I
POL_HV1H2
---
---
A/B
M
46
I
27
UniProt
VAR_POL_HV1H2_027
*
M
534
L
POL_HV1H2
---
---
A/B
M
46
L
28
UniProt
VAR_POL_HV1H2_028
*
I
535
V
POL_HV1H2
---
---
A/B
I
47
V
29
UniProt
VAR_POL_HV1H2_029
*
G
536
V
POL_HV1H2
---
---
A/B
G
48
V
30
UniProt
VAR_POL_HV1H2_030
*
I
538
L
POL_HV1H2
---
---
A/B
I
50
L
31
UniProt
VAR_POL_HV1H2_031
*
I
538
V
POL_HV1H2
---
---
A/B
I
50
V
32
UniProt
VAR_POL_HV1H2_032
*
F
541
L
POL_HV1H2
---
---
A/B
F
53
L
33
UniProt
VAR_POL_HV1H2_033
*
F
541
Y
POL_HV1H2
---
---
A/B
F
53
Y
34
UniProt
VAR_POL_HV1H2_034
*
I
542
A
POL_HV1H2
---
---
A/B
I
54
A
35
UniProt
VAR_POL_HV1H2_035
*
I
542
L
POL_HV1H2
---
---
A/B
I
54
L
36
UniProt
VAR_POL_HV1H2_036
*
I
542
M
POL_HV1H2
---
---
A/B
I
54
M
37
UniProt
VAR_POL_HV1H2_037
*
I
542
S
POL_HV1H2
---
---
A/B
I
54
S
38
UniProt
VAR_POL_HV1H2_038
*
I
542
T
POL_HV1H2
---
---
A/B
I
54
T
39
UniProt
VAR_POL_HV1H2_039
*
I
542
V
POL_HV1H2
---
---
A/B
I
54
V
40
UniProt
VAR_POL_HV1H2_040
*
K
543
R
POL_HV1H2
---
---
A/B
K
55
R
41
UniProt
VAR_POL_HV1H2_041
*
R
545
K
POL_HV1H2
---
---
A/B
R
57
K
42
UniProt
VAR_POL_HV1H2_042
*
Q
546
E
POL_HV1H2
---
---
A/B
Q
58
E
43
UniProt
VAR_POL_HV1H2_043
*
D
548
E
POL_HV1H2
---
---
A/B
D
60
E
44
UniProt
VAR_POL_HV1H2_044
*
Q
549
H
POL_HV1H2
---
---
A/B
Q
61
H
45
UniProt
VAR_POL_HV1H2_045
*
L
551
P
POL_HV1H2
---
---
A/B
L
63
P
46
UniProt
VAR_POL_HV1H2_046
*
L
551
T
POL_HV1H2
---
---
A/B
L
63
T
47
UniProt
VAR_POL_HV1H2_047
*
E
553
Q
POL_HV1H2
---
---
A/B
E
65
Q
48
UniProt
VAR_POL_HV1H2_048
*
I
554
F
POL_HV1H2
---
---
A/B
I
66
F
49
UniProt
VAR_POL_HV1H2_049
*
H
557
Y
POL_HV1H2
---
---
A/B
H
69
Y
50
UniProt
VAR_POL_HV1H2_050
*
A
559
I
POL_HV1H2
---
---
A/B
A
71
I
51
UniProt
VAR_POL_HV1H2_051
*
A
559
L
POL_HV1H2
---
---
A/B
A
71
L
52
UniProt
VAR_POL_HV1H2_052
*
A
559
T
POL_HV1H2
---
---
A/B
A
71
T
53
UniProt
VAR_POL_HV1H2_053
*
A
559
V
POL_HV1H2
---
---
A/B
A
71
V
54
UniProt
VAR_POL_HV1H2_054
*
G
561
S
POL_HV1H2
---
---
A/B
G
73
S
55
UniProt
VAR_POL_HV1H2_055
*
V
565
I
POL_HV1H2
---
---
A/B
V
77
I
56
UniProt
VAR_POL_HV1H2_056
*
V
570
A
POL_HV1H2
---
---
A/B
V
82
A
57
UniProt
VAR_POL_HV1H2_057
*
V
570
F
POL_HV1H2
---
---
A/B
V
82
F
58
UniProt
VAR_POL_HV1H2_058
*
V
570
I
POL_HV1H2
---
---
A/B
V
82
I
59
UniProt
VAR_POL_HV1H2_059
*
V
570
S
POL_HV1H2
---
---
A/B
V
82
S
60
UniProt
VAR_POL_HV1H2_060
*
V
570
T
POL_HV1H2
---
---
A/B
V
82
T
61
UniProt
VAR_POL_HV1H2_061
*
I
572
A
POL_HV1H2
---
---
A/B
I
84
A
62
UniProt
VAR_POL_HV1H2_062
*
I
572
V
POL_HV1H2
---
---
A/B
I
84
V
63
UniProt
VAR_POL_HV1H2_063
*
N
576
D
POL_HV1H2
---
---
A/B
N
88
D
64
UniProt
VAR_POL_HV1H2_064
*
N
576
S
POL_HV1H2
---
---
A/B
N
88
S
65
UniProt
VAR_POL_HV1H2_065
*
L
577
M
POL_HV1H2
---
---
A/B
L
89
M
66
UniProt
VAR_POL_HV1H2_066
*
L
578
M
POL_HV1H2
---
---
A/B
L
90
M
67
UniProt
VAR_POL_HV1H2_067
*
T
579
S
POL_HV1H2
---
---
A/B
T
91
S
68
UniProt
VAR_POL_HV1H2_068
*
I
581
L
POL_HV1H2
---
---
A/B
I
93
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ASP_PROT_RETROV (A:20-89,B:20-89)
2: ASP_PROTEASE (A:22-33,B:22-33)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASP_PROT_RETROV
PS50175
Aspartyl protease, retroviral-type family profile.
POL_HV1H2
508-577
2
A:20-89
B:20-89
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
POL_HV1H2
510-521
2
A:22-33
B:22-33
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1hxba_ (A:)
1b: SCOP_d1hxbb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Retroviral protease (retropepsin)
(591)
Protein domain
:
Human immunodeficiency virus type 1 protease
(514)
Human immunodeficiency virus type 1 [TaxId: 11676]
(424)
1a
d1hxba_
A:
1b
d1hxbb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1hxbA00 (A:1-99)
1b: CATH_1hxbB00 (B:1-99)
View:
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Classes
(
)
(
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Architectures
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Human immunodeficiency virus type 1 (clone 12). Organism_taxid: 11679.Variant: hxb-3.
(1)
1a
1hxbA00
A:1-99
1b
1hxbB00
B:1-99
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
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Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
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Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (41 KB)
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Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
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