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1HWZ
Asym. Unit
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Asym.Unit (493 KB)
Biol.Unit 1 (483 KB)
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(1)
Title
:
BOVINE GLUTAMATE DEHYDROGENASE COMPLEXED WITH NADPH, GLUTAMATE, AND GTP
Authors
:
T. J. Smith, P. E. Peterson, T. Schmidt, J. Fang, C. A. Stanley
Date
:
10 Jan 01 (Deposition) - 31 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Glutamate Dehydrogenase, Allostery, Nadph, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. J. Smith, P. E. Peterson, T. Schmidt, J. Fang, C. A. Stanley
Structures Of Bovine Glutamate Dehydrogenase Complexes Elucidate The Mechanism Of Purine Regulation.
J. Mol. Biol. V. 307 707 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: GLUTAMIC ACID (GLUa)
1b: GLUTAMIC ACID (GLUb)
1c: GLUTAMIC ACID (GLUc)
1d: GLUTAMIC ACID (GLUd)
1e: GLUTAMIC ACID (GLUe)
1f: GLUTAMIC ACID (GLUf)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
2e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
2f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
3c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
3d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
3e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
3f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLU
6
Mod. Amino Acid
GLUTAMIC ACID
2
GTP
6
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
NDP
6
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:90 , GLY A:92 , MET A:111 , LYS A:114 , LYS A:126 , ALA A:166 , PRO A:167 , ASN A:168 , THR A:199 , ARG A:211 , ASN A:349 , VAL A:378 , SER A:381 , NDP A:551
BINDING SITE FOR RESIDUE GLU A 550
02
AC2
SOFTWARE
ARG A:94 , LYS A:134 , ASN A:168 , MET A:169 , SER A:170 , THR A:215 , GLN A:250 , GLY A:251 , PHE A:252 , GLY A:253 , ASN A:254 , VAL A:255 , GLU A:275 , SER A:276 , LYS A:295 , ALA A:325 , ALA A:326 , SER A:327 , GLN A:330 , GLY A:347 , ALA A:348 , ASN A:349 , ASN A:374 , GLY A:377 , GLU A:550
BINDING SITE FOR RESIDUE NDP A 551
03
AC3
SOFTWARE
HIS A:209 , GLY A:210 , SER A:213 , ARG A:217 , ARG A:261 , TYR A:262 , ARG A:265 , LYS A:289 , GLU A:292 , HIS A:450
BINDING SITE FOR RESIDUE GTP A 553
04
AC4
SOFTWARE
LYS B:90 , GLY B:92 , MET B:111 , LYS B:114 , LYS B:126 , ALA B:166 , PRO B:167 , ASN B:168 , THR B:199 , ARG B:211 , ASN B:349 , VAL B:378 , SER B:381 , NDP B:559
BINDING SITE FOR RESIDUE GLU B 554
05
AC5
SOFTWARE
LYS C:90 , GLY C:92 , MET C:111 , LYS C:114 , LYS C:126 , ALA C:166 , PRO C:167 , ASN C:168 , THR C:199 , ARG C:211 , ASN C:349 , VAL C:378 , SER C:381 , NDP C:560
BINDING SITE FOR RESIDUE GLU C 555
06
AC6
SOFTWARE
LYS D:90 , GLY D:92 , MET D:111 , LYS D:114 , LYS D:126 , ALA D:166 , PRO D:167 , ASN D:168 , THR D:199 , ARG D:211 , ASN D:349 , VAL D:378 , SER D:381 , NDP D:561
BINDING SITE FOR RESIDUE GLU D 556
07
AC7
SOFTWARE
LYS E:90 , GLY E:92 , MET E:111 , LYS E:114 , LYS E:126 , ALA E:166 , PRO E:167 , ASN E:168 , THR E:199 , ARG E:211 , ASN E:349 , VAL E:378 , SER E:381 , NDP E:562
BINDING SITE FOR RESIDUE GLU E 557
08
AC8
SOFTWARE
LYS F:90 , GLY F:92 , MET F:111 , LYS F:114 , LYS F:126 , ALA F:166 , PRO F:167 , ASN F:168 , THR F:199 , ARG F:211 , ASN F:349 , VAL F:378 , SER F:381 , NDP F:563
BINDING SITE FOR RESIDUE GLU F 558
09
AC9
SOFTWARE
ARG B:94 , LYS B:134 , ASN B:168 , MET B:169 , SER B:170 , THR B:215 , GLN B:250 , GLY B:251 , PHE B:252 , GLY B:253 , ASN B:254 , VAL B:255 , GLU B:275 , SER B:276 , LYS B:295 , ALA B:325 , ALA B:326 , SER B:327 , GLN B:330 , GLY B:347 , ALA B:348 , ASN B:349 , ASN B:374 , GLY B:377 , GLU B:554
BINDING SITE FOR RESIDUE NDP B 559
10
BC1
SOFTWARE
ARG C:94 , LYS C:134 , ASN C:168 , MET C:169 , SER C:170 , THR C:215 , GLN C:250 , GLY C:251 , PHE C:252 , GLY C:253 , ASN C:254 , VAL C:255 , GLU C:275 , SER C:276 , LYS C:295 , ALA C:325 , ALA C:326 , SER C:327 , GLN C:330 , GLY C:347 , ALA C:348 , ASN C:349 , ASN C:374 , GLY C:377 , GLU C:555
BINDING SITE FOR RESIDUE NDP C 560
11
BC2
SOFTWARE
ARG D:94 , LYS D:134 , ASN D:168 , MET D:169 , SER D:170 , THR D:215 , GLN D:250 , GLY D:251 , PHE D:252 , GLY D:253 , ASN D:254 , VAL D:255 , GLU D:275 , SER D:276 , LYS D:295 , ALA D:325 , ALA D:326 , SER D:327 , GLN D:330 , GLY D:347 , ALA D:348 , ASN D:349 , ASN D:374 , GLY D:377 , GLU D:556
BINDING SITE FOR RESIDUE NDP D 561
12
BC3
SOFTWARE
ARG E:94 , LYS E:134 , ASN E:168 , MET E:169 , SER E:170 , THR E:215 , GLN E:250 , GLY E:251 , PHE E:252 , GLY E:253 , ASN E:254 , VAL E:255 , GLU E:275 , SER E:276 , LYS E:295 , ALA E:325 , ALA E:326 , SER E:327 , GLN E:330 , GLY E:347 , ALA E:348 , ASN E:349 , ASN E:374 , GLY E:377 , GLU E:557
BINDING SITE FOR RESIDUE NDP E 562
13
BC4
SOFTWARE
ARG F:94 , LYS F:134 , ASN F:168 , MET F:169 , SER F:170 , THR F:215 , GLN F:250 , GLY F:251 , PHE F:252 , GLY F:253 , ASN F:254 , VAL F:255 , GLU F:275 , SER F:276 , LYS F:295 , ALA F:325 , ALA F:326 , SER F:327 , GLN F:330 , GLY F:347 , ALA F:348 , ASN F:349 , ASN F:374 , GLY F:377 , GLU F:558
BINDING SITE FOR RESIDUE NDP F 563
14
BC5
SOFTWARE
HIS B:209 , GLY B:210 , SER B:213 , ARG B:217 , ARG B:261 , TYR B:262 , ARG B:265 , LYS B:289 , GLU B:292 , HIS B:450
BINDING SITE FOR RESIDUE GTP B 564
15
BC6
SOFTWARE
HIS C:209 , GLY C:210 , SER C:213 , ARG C:217 , ARG C:261 , TYR C:262 , ARG C:265 , LYS C:289 , GLU C:292 , HIS C:450
BINDING SITE FOR RESIDUE GTP C 565
16
BC7
SOFTWARE
HIS D:209 , GLY D:210 , SER D:213 , ARG D:217 , ARG D:261 , TYR D:262 , ARG D:265 , LYS D:289 , GLU D:292 , HIS D:450
BINDING SITE FOR RESIDUE GTP D 566
17
BC8
SOFTWARE
HIS E:209 , GLY E:210 , SER E:213 , ARG E:217 , ARG E:261 , TYR E:262 , ARG E:265 , LYS E:289 , GLU E:292 , HIS E:450
BINDING SITE FOR RESIDUE GTP E 567
18
BC9
SOFTWARE
HIS F:209 , GLY F:210 , SER F:213 , ARG F:217 , ARG F:261 , TYR F:262 , ARG F:265 , LYS F:289 , GLU F:292 , HIS F:450
BINDING SITE FOR RESIDUE GTP F 568
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: GLFV_DEHYDROGENASE (A:120-133,B:120-133,C:120-133,D:12...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLFV_DEHYDROGENASE
PS00074
Glu / Leu / Phe / Val dehydrogenases active site.
DHE3_BOVIN
177-190
6
A:120-133
B:120-133
C:120-133
D:120-133
E:120-133
F:120-133
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1hwza2 (A:1-208)
1b: SCOP_d1hwzb2 (B:1-208)
1c: SCOP_d1hwzc2 (C:1-208)
1d: SCOP_d1hwzd2 (D:1-208)
1e: SCOP_d1hwze2 (E:1-208)
1f: SCOP_d1hwzf2 (F:1-208)
2a: SCOP_d1hwza1 (A:209-501)
2b: SCOP_d1hwzb1 (B:209-501)
2c: SCOP_d1hwzc1 (C:209-501)
2d: SCOP_d1hwzd1 (D:209-501)
2e: SCOP_d1hwze1 (E:209-501)
2f: SCOP_d1hwzf1 (F:209-501)
View:
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Classes
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)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Superfamily
:
Aminoacid dehydrogenase-like, N-terminal domain
(100)
Family
:
Aminoacid dehydrogenases
(28)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
1a
d1hwza2
A:1-208
1b
d1hwzb2
B:1-208
1c
d1hwzc2
C:1-208
1d
d1hwzd2
D:1-208
1e
d1hwze2
E:1-208
1f
d1hwzf2
F:1-208
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Aminoacid dehydrogenase-like, C-terminal domain
(67)
Protein domain
:
Glutamate dehydrogenase
(19)
Cow (Bos taurus) [TaxId: 9913]
(6)
2a
d1hwza1
A:209-501
2b
d1hwzb1
B:209-501
2c
d1hwzc1
C:209-501
2d
d1hwzd1
D:209-501
2e
d1hwze1
E:209-501
2f
d1hwzf1
F:209-501
[
close SCOP info
]
CATH Domains
(3, 18)
Info
all CATH domains
1a: CATH_1hwzA02 (A:57-205)
1b: CATH_1hwzB02 (B:57-205)
1c: CATH_1hwzC02 (C:57-205)
1d: CATH_1hwzD02 (D:57-205)
1e: CATH_1hwzE02 (E:57-205)
1f: CATH_1hwzF02 (F:57-205)
2a: CATH_1hwzA03 (A:206-500)
2b: CATH_1hwzB03 (B:206-500)
2c: CATH_1hwzC03 (C:206-500)
2d: CATH_1hwzD03 (D:206-500)
2e: CATH_1hwzE03 (E:206-500)
2f: CATH_1hwzF03 (F:206-500)
3a: CATH_1hwzA01 (A:6-56)
3b: CATH_1hwzB01 (B:6-56)
3c: CATH_1hwzC01 (C:6-56)
3d: CATH_1hwzD01 (D:6-56)
3e: CATH_1hwzE01 (E:6-56)
3f: CATH_1hwzF01 (F:6-56)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Leucine Dehydrogenase; Chain A, domain 1
(52)
Homologous Superfamily
:
Leucine Dehydrogenase, chain A, domain 1
(52)
Cattle (Bos taurus)
(5)
1a
1hwzA02
A:57-205
1b
1hwzB02
B:57-205
1c
1hwzC02
C:57-205
1d
1hwzD02
D:57-205
1e
1hwzE02
E:57-205
1f
1hwzF02
F:57-205
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Cattle (Bos taurus)
(6)
2a
1hwzA03
A:206-500
2b
1hwzB03
B:206-500
2c
1hwzC03
C:206-500
2d
1hwzD03
D:206-500
2e
1hwzE03
E:206-500
2f
1hwzF03
F:206-500
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.140, no name defined]
(11)
Cattle (Bos taurus)
(5)
3a
1hwzA01
A:6-56
3b
1hwzB01
B:6-56
3c
1hwzC01
C:6-56
3d
1hwzD01
D:6-56
3e
1hwzE01
E:6-56
3f
1hwzF01
F:6-56
[
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Pfam Domains
(0, 0)
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Asym.Unit (493 KB)
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