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1HVV
Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
SELF-ASSOCIATION OF THE H3 REGION OF SYNTAXIN 1A: IMPLICATIONS FOR SNARE COMPLEX ASSEMBLY
Authors
:
K. M. S. Misura, R. H. Scheller, W. I. Weis
Date
:
08 Jan 01 (Deposition) - 31 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Four-Helix Bundle, Homotetramer, Alpha-Helix, , Endocytosis/Exocytosis Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Misura, R. H. Scheller, W. I. Weis
Self-Association Of The H3 Region Of Syntaxin 1A. Implications For Intermediates In Snare Complex Assembly.
J. Biol. Chem. V. 276 13273 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: D(-)-TARTARIC ACID (TARa)
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Label:
No.
Name
Count
Type
Full Name
1
TAR
1
Ligand/Ion
D(-)-TARTARIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:227 , ILE A:230 , ASP A:231 , ILE C:209 , ARG C:210 , LEU C:212 , HIS C:213 , HOH C:1357 , HOH C:1361
BINDING SITE FOR RESIDUE TAR C 1352
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (A:192-254,C:192-254)
2: SYNTAXIN (A:198-237,B:198-237,C:198-237,D:19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
STX1A_RAT
192-254
2
A:192-254
C:192-254
2
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
4
A:198-237
B:198-237
C:198-237
D:198-237
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Exons
(2, 8)
Info
All Exons
Exon 1.8 (A:190-226 | B:193-226 | C:190-226 ...)
Exon 1.9 (A:227-256 | B:227-254 | C:227-255 ...)
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All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
4
A:190-226
B:193-226
C:190-226
D:193-226
37
34
37
34
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
4
A:227-256
B:227-254
C:227-255
D:227-253
30
28
29
27
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1hvva_ (A:)
1b: SCOP_d1hvvb_ (B:)
1c: SCOP_d1hvvc_ (C:)
1d: SCOP_d1hvvd_ (D:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
Syntaxin 1A
(8)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d1hvva_
A:
1b
d1hvvb_
B:
1c
d1hvvc_
C:
1d
d1hvvd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1hvvC00 (C:190-255)
1b: CATH_1hvvA00 (A:190-256)
1c: CATH_1hvvB00 (B:193-254)
1d: CATH_1hvvD00 (D:193-253)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Norway rat (Rattus norvegicus)
(5)
1a
1hvvC00
C:190-255
1b
1hvvA00
A:190-256
1c
1hvvB00
B:193-254
1d
1hvvD00
D:193-253
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (48 KB)
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