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1HV9
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (216 KB)
Biol.Unit 2 (218 KB)
Biol.Unit 3 (217 KB)
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(1)
Title
:
STRUCTURE OF E. COLI GLMU: ANALYSIS OF PYROPHOSPHORYLASE AND ACETYLTRANSFERASE ACTIVE SITES
Authors
:
L. R. Olsen, S. L. Roderick
Date
:
08 Jan 01 (Deposition) - 21 Feb 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: A (3x)
Keywords
:
Left-Handed Parallel Beta-Helix, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. R. Olsen, S. L. Roderick
Structure Of The Escherichia Coli Glmu Pyrophosphorylase An Acetyltransferase Active Sites.
Biochemistry V. 40 1913 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
1a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
2e: COBALT (II) ION (COe)
3a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
3b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CO
5
Ligand/Ion
COBALT (II) ION
2
COA
2
Ligand/Ion
COENZYME A
3
UD1
2
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
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]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS B:25 , ASP B:105 , ASN B:227 , UD1 B:3002 , HOH B:5026 , HOH B:5027
BINDING SITE FOR RESIDUE CO B 9027
2
AC2
SOFTWARE
ASP B:406 , HOH B:5045 , CO B:9029
BINDING SITE FOR RESIDUE CO B 9028
3
AC3
SOFTWARE
ASP B:406 , HOH B:6868 , CO B:9028
BINDING SITE FOR RESIDUE CO B 9029
4
AC4
SOFTWARE
ASP A:406 , HOH A:6867 , CO A:9031
BINDING SITE FOR RESIDUE CO A 9030
5
AC5
SOFTWARE
ASP A:406 , HOH A:6036 , CO A:9030
BINDING SITE FOR RESIDUE CO A 9031
6
AC6
SOFTWARE
CYS A:385 , TYR A:387 , SER A:405 , ALA A:422 , ALA A:423 , ARG A:440 , LYS A:446 , HOH A:4037 , HOH A:5142 , HOH A:5458 , ARG B:429
BINDING SITE FOR RESIDUE COA A 2001
7
AC7
SOFTWARE
ARG A:429 , CYS B:385 , TYR B:387 , GLY B:404 , SER B:405 , ALA B:422 , ALA B:423 , ARG B:440 , LYS B:446 , TRP B:449 , HOH B:4051 , HOH B:5166
BINDING SITE FOR RESIDUE COA B 2002
8
AC8
SOFTWARE
LEU A:11 , ALA A:13 , GLY A:14 , GLN A:76 , GLN A:79 , LEU A:80 , GLY A:81 , THR A:82 , TYR A:103 , ASP A:105 , GLY A:140 , GLU A:154 , ASN A:169 , THR A:170 , TYR A:197 , ILE A:198 , THR A:199 , HOH A:5272 , HOH A:5373
BINDING SITE FOR RESIDUE UD1 A 3001
9
AC9
SOFTWARE
LEU B:11 , ALA B:12 , ALA B:13 , GLY B:14 , LYS B:25 , GLN B:76 , GLN B:79 , GLY B:81 , THR B:82 , TYR B:103 , GLY B:104 , ASP B:105 , TYR B:139 , GLY B:140 , GLU B:154 , ASN B:169 , THR B:199 , ASN B:227 , HOH B:5006 , HOH B:5026 , HOH B:5027 , HOH B:5120 , HOH B:5264 , CO B:9027
BINDING SITE FOR RESIDUE UD1 B 3002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:403-431,B:403-431)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_ECOLI
403-431
2
A:403-431
B:403-431
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hv9a1 (A:252-452)
1b: SCOP_d1hv9b1 (B:252-452)
2a: SCOP_d1hv9a2 (A:4-251)
2b: SCOP_d1hv9b2 (B:3-251)
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
GlmU C-terminal domain-like
(22)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
(12)
Escherichia coli [TaxId: 562]
(6)
1a
d1hv9a1
A:252-452
1b
d1hv9b1
B:252-452
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
(12)
Escherichia coli [TaxId: 562]
(6)
2a
d1hv9a2
A:4-251
2b
d1hv9b2
B:3-251
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1hv9B01 (B:4-251)
1b: CATH_1hv9A01 (A:4-227)
2a: CATH_1hv9B02 (B:252-440)
2b: CATH_1hv9A02 (A:228-452)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Escherichia coli. Organism_taxid: 562.
(8)
1a
1hv9B01
B:4-251
1b
1hv9A01
A:4-227
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Escherichia coli. Organism_taxid: 562.
(10)
2a
1hv9B02
B:252-440
2b
1hv9A02
A:228-452
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (216 KB)
Header - Biol.Unit 1
Biol.Unit 2 (218 KB)
Header - Biol.Unit 2
Biol.Unit 3 (217 KB)
Header - Biol.Unit 3
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