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1HV4
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (96 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF BAR-HEAD GOOSE HEMOGLOBIN (DEOXY FORM)
Authors
:
Y. Liang, Z. Hua, X. Liang, Q. Xu, G. Lu
Date
:
07 Jan 01 (Deposition) - 17 Jan 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Allosteric Mechanism, Oxygen Transport, Heme, Respiratory Protein, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Liang, Z. Hua, X. Liang, Q. Xu, G. Lu
The Crystal Structure Of Bar-Headed Goose Hemoglobin In Deoxy Form: The Allosteric Mechanism Of A Hemoglobin Species With High Oxygen Affinity.
J. Mol. Biol. V. 313 123 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:42 , PHE A:43 , HIS A:45 , PHE A:46 , HIS A:58 , LYS A:61 , HIS A:87 , ASN A:97 , PHE A:98 , LEU A:101 , VAL A:132
BINDING SITE FOR RESIDUE HEM A 151
2
AC2
SOFTWARE
PHE B:41 , PHE B:42 , HIS B:63 , LYS B:66 , SER B:70 , HIS B:92 , ASN B:102 , LEU B:141
BINDING SITE FOR RESIDUE HEM B 152
3
AC3
SOFTWARE
TYR C:42 , PHE C:43 , HIS C:45 , PHE C:46 , HIS C:58 , LYS C:61 , HIS C:87 , ASN C:97 , PHE C:98 , LEU C:101 , VAL C:132
BINDING SITE FOR RESIDUE HEM C 153
4
AC4
SOFTWARE
PHE D:41 , PHE D:42 , PHE D:45 , HIS D:63 , LYS D:66 , SER D:70 , HIS D:92 , ASN D:102 , LEU D:141
BINDING SITE FOR RESIDUE HEM D 154
5
AC5
SOFTWARE
TYR E:42 , PHE E:43 , HIS E:45 , PHE E:46 , HIS E:58 , LYS E:61 , HIS E:87 , ASN E:97 , PHE E:98 , LEU E:101 , VAL E:132
BINDING SITE FOR RESIDUE HEM E 155
6
AC6
SOFTWARE
PHE F:41 , PHE F:42 , PHE F:45 , HIS F:63 , LYS F:66 , SER F:70 , HIS F:92 , ASN F:102 , LEU F:141
BINDING SITE FOR RESIDUE HEM F 156
7
AC7
SOFTWARE
TYR G:42 , PHE G:43 , HIS G:45 , PHE G:46 , HIS G:58 , LYS G:61 , HIS G:87 , ASN G:97 , PHE G:98 , LEU G:101 , VAL G:132
BINDING SITE FOR RESIDUE HEM G 157
8
AC8
SOFTWARE
PHE H:41 , PHE H:42 , PHE H:45 , HIS H:63 , LYS H:66 , SER H:70 , HIS H:92 , ASN H:102 , LEU H:141
BINDING SITE FOR RESIDUE HEM H 158
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:2-141,C:2-141,E:2-141,G:2-141,B:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBA_ANSIN
3-142
4
A:2-141
C:2-141
E:2-141
G:2-141
HBB_ANSIN
4-146
4
B:4-146
D:4-146
F:4-146
H:4-146
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1hv4a_ (A:)
1b: SCOP_d1hv4c_ (C:)
1c: SCOP_d1hv4e_ (E:)
1d: SCOP_d1hv4g_ (G:)
2a: SCOP_d1hv4b_ (B:)
2b: SCOP_d1hv4d_ (D:)
2c: SCOP_d1hv4f_ (F:)
2d: SCOP_d1hv4h_ (H:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Bar-headed goose (Anser indicus) [TaxId: 8846]
(3)
1a
d1hv4a_
A:
1b
d1hv4c_
C:
1c
d1hv4e_
E:
1d
d1hv4g_
G:
Protein domain
:
Hemoglobin, beta-chain
(292)
Bar-headed goose (Anser indicus) [TaxId: 8846]
(3)
2a
d1hv4b_
B:
2b
d1hv4d_
D:
2c
d1hv4f_
F:
2d
d1hv4h_
H:
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1hv4B00 (B:1-146)
1b: CATH_1hv4G00 (G:1-141)
1c: CATH_1hv4D00 (D:1-146)
1d: CATH_1hv4F00 (F:1-146)
1e: CATH_1hv4H00 (H:1-146)
1f: CATH_1hv4A00 (A:1-141)
1g: CATH_1hv4C00 (C:1-141)
1h: CATH_1hv4E00 (E:1-141)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Bar-headed goose (Anser indicus)
(3)
1a
1hv4B00
B:1-146
1b
1hv4G00
G:1-141
1c
1hv4D00
D:1-146
1d
1hv4F00
F:1-146
1e
1hv4H00
H:1-146
1f
1hv4A00
A:1-141
1g
1hv4C00
C:1-141
1h
1hv4E00
E:1-141
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Pfam Domains
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Chain H
Asymmetric Unit 1
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Asym.Unit (195 KB)
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Header - Biol.Unit 1
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