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1HUP
Asym. Unit
Info
Asym.Unit (29 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
HUMAN MANNOSE BINDING PROTEIN CARBOHYDRATE RECOGNITION DOMAIN TRIMERIZES THROUGH A TRIPLE ALPHA-HELICAL COILED-COIL
Authors
:
S. Sheriff
Date
:
21 Sep 94 (Deposition) - 15 Oct 95 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Alpha-Helical Coiled-Coil, C-Type Lectin
(Keyword Search:
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)
Reference
:
S. Sheriff, C. Y. Chang, R. A. Ezekowitz
Human Mannose-Binding Protein Carbohydrate Recognition Domain Trimerizes Through A Triple Alpha-Helical Coiled-Coil.
Nat. Struct. Biol. V. 1 789 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:168 , GLU A:172 , ASN A:195 , GLU A:200 , ASP A:201 , HOH A:339
BINDING SITE FOR RESIDUE CA A 301
2
AC2
SOFTWARE
GLU A:192 , ASN A:194 , GLU A:200 , ASN A:212 , ASP A:213 , SO4 A:304
BINDING SITE FOR RESIDUE CA A 302
3
AC3
SOFTWARE
GLU A:172 , ASP A:201
BINDING SITE FOR RESIDUE CA A 303
4
AC4
SOFTWARE
GLU A:192 , ASN A:194 , GLU A:200 , ASN A:212 , ASP A:213 , CA A:302
BINDING SITE FOR RESIDUE SO4 A 304
5
AC5
SOFTWARE
ASN A:189 , GLU A:190 , GLN A:210 , HOH A:306
BINDING SITE FOR RESIDUE CA A 305
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050119 (N194Y, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050119
N
214
Y
MBL2_HUMAN
Polymorphism
12260094
A
N
194
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:114-225)
2: C_TYPE_LECTIN_1 (A:202-224)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL2_HUMAN
134-245
1
A:114-225
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL2_HUMAN
222-244
1
A:202-224
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:88-105)
Exon 1.4b (A:105-228)
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4b
3: Boundary 1.4b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373968
1a
ENSE00001462028
chr10:
54531460-54531209
252
MBL2_HUMAN
1-63
63
0
-
-
1.2
ENST00000373968
2
ENSE00001093376
chr10:
54530546-54530430
117
MBL2_HUMAN
63-102
40
0
-
-
1.3
ENST00000373968
3
ENSE00001093382
chr10:
54529075-54529007
69
MBL2_HUMAN
102-125
24
1
A:88-105
18
1.4b
ENST00000373968
4b
ENSE00001462026
chr10:
54528270-54525140
3131
MBL2_HUMAN
125-248
124
1
A:105-228
124
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1hupa1 (A:112-228)
2a: SCOP_d1hupa2 (A:88-111)
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Classes
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1hupa1
A:112-228
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1hupa2
A:88-111
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hupA00 (A:88-228)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1hupA00
A:88-228
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (29 KB)
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