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1HR8
Biol. Unit 1
Info
Asym.Unit (528 KB)
Biol.Unit 1 (137 KB)
Biol.Unit 2 (136 KB)
Biol.Unit 3 (136 KB)
Biol.Unit 4 (136 KB)
Biol.Unit 5 (520 KB)
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(1)
Title
:
YEAST MITOCHONDRIAL PROCESSING PEPTIDASE BETA-E73Q MUTANT COMPLEXED WITH CYTOCHROME C OXIDASE IV SIGNAL PEPTIDE
Authors
:
A. B. Taylor, B. S. Smith, S. Kitada, K. Kojima, H. Miyaura, Z. Otwinowsk J. Deisenhofer
Date
:
21 Dec 00 (Deposition) - 11 Jul 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,O,P,Q,R
Biol. Unit 1: A,B,O (1x)
Biol. Unit 2: C,D,P (1x)
Biol. Unit 3: E,F,Q (1x)
Biol. Unit 4: G,H,R (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H,O,P,Q,R (1x)
Keywords
:
Hxxeh Zinc-Binding Motif, Hydrolase
(Keyword Search:
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Reference
:
A. B. Taylor, B. S. Smith, S. Kitada, K. Kojima, H. Miyaura, Z. Otwinowski, A. Ito, J. Deisenhofer
Crystal Structures Of Mitochondrial Processing Peptidase Reveal The Mode For Specific Cleavage Of Import Signal Sequences.
Structure V. 9 615 2001
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:70 , HIS B:74 , GLU B:150 , HOH O:1
BINDING SITE FOR RESIDUE ZN B 501
2
AC5
SOFTWARE
TRP A:147 , PRO A:175 , ARG A:176 , PRO E:175 , ARG E:176
BINDING SITE FOR RESIDUE EPE A 489
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (B:57-80)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
MPPA_YEAST
49-72
1
A:49-72
-
-
-
MPPB_YEAST
57-80
1
B:57-80
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1hr8a1 (A:14-233)
1b: SCOP_d1hr8a2 (A:234-470)
1c: SCOP_d1hr8c1 (C:16-233)
1d: SCOP_d1hr8c2 (C:234-468)
1e: SCOP_d1hr8e1 (E:14-233)
1f: SCOP_d1hr8e2 (E:234-468)
1g: SCOP_d1hr8g1 (G:14-233)
1h: SCOP_d1hr8g2 (G:234-470)
2a: SCOP_d1hr8b1 (B:24-245)
2b: SCOP_d1hr8b2 (B:246-462)
2c: SCOP_d1hr8d1 (D:20-245)
2d: SCOP_d1hr8d2 (D:246-462)
2e: SCOP_d1hr8f1 (F:20-245)
2f: SCOP_d1hr8f2 (F:246-462)
2g: SCOP_d1hr8h1 (H:22-245)
2h: SCOP_d1hr8h2 (H:246-462)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Mitochondrial processing peptidase (MPP) alpha chain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d1hr8a1
A:14-233
1b
d1hr8a2
A:234-470
1c
d1hr8c1
C:16-233
1d
d1hr8c2
C:234-468
1e
d1hr8e1
E:14-233
1f
d1hr8e2
E:234-468
1g
d1hr8g1
G:14-233
1h
d1hr8g2
G:234-470
Protein domain
:
Mitochondrial processing peptidase (MPP) beta chain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
2a
d1hr8b1
B:24-245
2b
d1hr8b2
B:246-462
2c
d1hr8d1
D:20-245
2d
d1hr8d2
D:246-462
2e
d1hr8f1
F:20-245
2f
d1hr8f2
F:246-462
2g
d1hr8h1
H:22-245
2h
d1hr8h2
H:246-462
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1hr8D01 (D:26-240)
1b: CATH_1hr8B01 (B:26-242)
1c: CATH_1hr8F01 (F:26-242)
1d: CATH_1hr8H01 (H:26-242)
1e: CATH_1hr8B02 (B:254-461)
1f: CATH_1hr8D02 (D:254-461)
1g: CATH_1hr8F02 (F:254-461)
1h: CATH_1hr8H02 (H:254-461)
1i: CATH_1hr8C01 (C:16-227)
1j: CATH_1hr8A01 (A:14-227)
1k: CATH_1hr8E01 (E:14-227)
1l: CATH_1hr8G01 (G:14-227)
1m: CATH_1hr8E02 (E:234-467)
1n: CATH_1hr8G02 (G:234-469)
1o: CATH_1hr8C02 (C:234-467)
1p: CATH_1hr8A02 (A:234-469)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Baker's yeast (Saccharomyces cerevisiae)
(9)
1a
1hr8D01
D:26-240
1b
1hr8B01
B:26-242
1c
1hr8F01
F:26-242
1d
1hr8H01
H:26-242
1e
1hr8B02
B:254-461
1f
1hr8D02
D:254-461
1g
1hr8F02
F:254-461
1h
1hr8H02
H:254-461
1i
1hr8C01
C:16-227
1j
1hr8A01
A:14-227
1k
1hr8E01
E:14-227
1l
1hr8G01
G:14-227
1m
1hr8E02
E:234-467
1n
1hr8G02
G:234-469
1o
1hr8C02
C:234-467
1p
1hr8A02
A:234-469
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (528 KB)
Header - Asym.Unit
Biol.Unit 1 (137 KB)
Header - Biol.Unit 1
Biol.Unit 2 (136 KB)
Header - Biol.Unit 2
Biol.Unit 3 (136 KB)
Header - Biol.Unit 3
Biol.Unit 4 (136 KB)
Header - Biol.Unit 4
Biol.Unit 5 (520 KB)
Header - Biol.Unit 5
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