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1HR7
Biol. Unit 2
Info
Asym.Unit (563 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (145 KB)
Biol.Unit 4 (145 KB)
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(1)
Title
:
YEAST MITOCHONDRIAL PROCESSING PEPTIDASE BETA-E73Q MUTANT
Authors
:
A. B. Taylor, B. S. Smith, S. Kitada, K. Kojima, H. Miyaura, Z. Otwinowski, A. Ito, J. Deisenhofer
Date
:
21 Dec 00 (Deposition) - 11 Jul 01 (Release) - 23 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Hxxeh Zinc-Binding Motif, Hydrolase
(Keyword Search:
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Reference
:
A. B. Taylor, B. S. Smith, S. Kitada, K. Kojima, H. Miyaura, Z. Otwinowski, A. Ito, J. Deisenhofer
Crystal Structures Of Mitochondrial Processing Peptidase Reveal The Mode For Specific Cleavage Of Import Signal Sequences.
Structure V. 9 615 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS D:70 , HIS D:74 , GLU D:150 , HOH D:503
BINDING SITE FOR RESIDUE ZN D 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (D:57-80)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
MPPA_YEAST
49-72
1
-
C:49-72
-
-
MPPB_YEAST
57-80
1
-
D:57-80
-
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1hr7a1 (A:14-233)
1b: SCOP_d1hr7c1 (C:16-233)
1c: SCOP_d1hr7c2 (C:234-468)
1d: SCOP_d1hr7e1 (E:14-233)
1e: SCOP_d1hr7e2 (E:234-468)
1f: SCOP_d1hr7g1 (G:14-233)
1g: SCOP_d1hr7g2 (G:234-467)
1h: SCOP_d1hr7a2 (A:234-470)
2a: SCOP_d1hr7b1 (B:24-245)
2b: SCOP_d1hr7d1 (D:22-245)
2c: SCOP_d1hr7d2 (D:246-462)
2d: SCOP_d1hr7f1 (F:23-245)
2e: SCOP_d1hr7f2 (F:246-462)
2f: SCOP_d1hr7h1 (H:23-245)
2g: SCOP_d1hr7h2 (H:246-462)
2h: SCOP_d1hr7b2 (B:246-462)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Mitochondrial processing peptidase (MPP) alpha chain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
1a
d1hr7a1
A:14-233
1b
d1hr7c1
C:16-233
1c
d1hr7c2
C:234-468
1d
d1hr7e1
E:14-233
1e
d1hr7e2
E:234-468
1f
d1hr7g1
G:14-233
1g
d1hr7g2
G:234-467
1h
d1hr7a2
A:234-470
Protein domain
:
Mitochondrial processing peptidase (MPP) beta chain
(4)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
2a
d1hr7b1
B:24-245
2b
d1hr7d1
D:22-245
2c
d1hr7d2
D:246-462
2d
d1hr7f1
F:23-245
2e
d1hr7f2
F:246-462
2f
d1hr7h1
H:23-245
2g
d1hr7h2
H:246-462
2h
d1hr7b2
B:246-462
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1hr7D01 (D:26-240)
1b: CATH_1hr7F01 (F:26-240)
1c: CATH_1hr7H01 (H:26-240)
1d: CATH_1hr7B01 (B:26-242)
1e: CATH_1hr7B02 (B:254-461)
1f: CATH_1hr7D02 (D:254-461)
1g: CATH_1hr7F02 (F:254-461)
1h: CATH_1hr7H02 (H:254-461)
1i: CATH_1hr7C01 (C:16-227)
1j: CATH_1hr7A01 (A:14-227)
1k: CATH_1hr7E01 (E:14-227)
1l: CATH_1hr7G01 (G:14-227)
1m: CATH_1hr7C02 (C:234-467)
1n: CATH_1hr7E02 (E:234-467)
1o: CATH_1hr7G02 (G:234-466)
1p: CATH_1hr7A02 (A:234-470)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Baker's yeast (Saccharomyces cerevisiae)
(9)
1a
1hr7D01
D:26-240
1b
1hr7F01
F:26-240
1c
1hr7H01
H:26-240
1d
1hr7B01
B:26-242
1e
1hr7B02
B:254-461
1f
1hr7D02
D:254-461
1g
1hr7F02
F:254-461
1h
1hr7H02
H:254-461
1i
1hr7C01
C:16-227
1j
1hr7A01
A:14-227
1k
1hr7E01
E:14-227
1l
1hr7G01
G:14-227
1m
1hr7C02
C:234-467
1n
1hr7E02
E:234-467
1o
1hr7G02
G:234-466
1p
1hr7A02
A:234-470
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (563 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (145 KB)
Header - Biol.Unit 2
Biol.Unit 3 (145 KB)
Header - Biol.Unit 3
Biol.Unit 4 (145 KB)
Header - Biol.Unit 4
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