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1HR4
Theor. Model
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Theoretical Model (35 KB)
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(1)
Title
:
MOLECULAR MODEL OF DOMAINS 3 AND 4 OF MEMBRANE COFACTOR PROTEIN (MCP, CD46)
Authors
:
T. S. Jokiranta, C. Bagley, D. L. Gordon
Date
:
20 Dec 00 (Deposition) - 28 Jun 02 (Release) - 01 Nov 02 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Mcp, Cd46, Theoretical Model, Sushi-Domain, Scr-Domain, Short Consensus Repeat Domain, Complement
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Giannakis, T. S. Jokiranta, R. J. Ormsby, T. G. Duthy, D. A. Male, D. Christiansen, V. A. Fischetti, C. Bagley, B. E. Loveland, D. L. Gordon
Identification Of The Streptococcal M Protein Binding Site On Membrane Cofactor Protein (Cd46).
J. Immunol. V. 168 4585 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_026569 (P7S, chain A, )
2: VAR_063657 (W58C, chain A, )
3: VAR_035828 (C70Y, chain A, )
4: VAR_MCP_HUMAN_CCDS1479_1_01 (C70Y, chain A, )
5: VAR_063658 (P73R, chain A, )
6: VAR_026570 (S82P, chain A, )
7: VAR_022262 (D108N, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_026569
P
165
S
MCP_HUMAN
Disease (AHUS2)
---
A
P
7
S
2
UniProt
VAR_063657
W
216
C
MCP_HUMAN
Disease (AHUS2)
---
A
W
58
C
3
UniProt
VAR_035828
C
228
Y
MCP_HUMAN
Unclassified
---
A
C
70
Y
4
CancerSNP
VAR_MCP_HUMAN_CCDS1479_1_01
*
C
228
Y
MCP_HUMAN
Disease (Colorectal cancer)
---
A
C
70
Y
5
UniProt
VAR_063658
P
231
R
MCP_HUMAN
Disease (AHUS2)
---
A
P
73
R
6
UniProt
VAR_026570
S
240
P
MCP_HUMAN
Disease (AHUS2)
---
A
S
82
P
7
UniProt
VAR_022262
D
266
N
MCP_HUMAN
Polymorphism
17006830
A
D
108
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|-|A:2-67|A:68-126)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
MCP_HUMAN
33-96
97-159
160-225
226-285
2
-
-
A:2-67
A:68-126
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Exons
(3, 3)
Info
All Exons
Exon 1.4a (A:1-1)
Exon 1.4d (A:1-67)
Exon 1.5b (A:67-126)
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All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.4d
3: Boundary 1.4d/1.5b
4: Boundary 1.5b/1.5e
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358170
1a
ENSE00001225216
chr1:
207925402-207925654
253
MCP_HUMAN
1-33
33
0
-
-
1.2
ENST00000358170
2
ENSE00001600549
chr1:
207930359-207930547
189
MCP_HUMAN
33-96
64
0
-
-
1.3
ENST00000358170
3
ENSE00001725236
chr1:
207930885-207930987
103
MCP_HUMAN
96-130
35
0
-
-
1.4a
ENST00000358170
4a
ENSE00001719360
chr1:
207932984-207933069
86
MCP_HUMAN
130-159
30
1
A:1-1
1
1.4d
ENST00000358170
4d
ENSE00001167611
chr1:
207934594-207934791
198
MCP_HUMAN
159-225
67
1
A:1-67
67
1.5b
ENST00000358170
5b
ENSE00001167601
chr1:
207940358-207940540
183
MCP_HUMAN
225-286
62
1
A:67-126
60
1.5e
ENST00000358170
5e
ENSE00001320886
chr1:
207940952-207940996
45
MCP_HUMAN
286-301
16
0
-
-
1.5f
ENST00000358170
5f
ENSE00000792032
chr1:
207941124-207941168
45
MCP_HUMAN
301-316
16
0
-
-
1.5j
ENST00000358170
5j
ENSE00001167583
chr1:
207943666-207943707
42
MCP_HUMAN
316-330
15
0
-
-
1.6a
ENST00000358170
6a
ENSE00001167577
chr1:
207956637-207956675
39
MCP_HUMAN
330-343
14
0
-
-
1.7
ENST00000358170
7
ENSE00001167569
chr1:
207958416-207958451
36
MCP_HUMAN
343-355
13
0
-
-
1.8a
ENST00000358170
8a
ENSE00001167565
chr1:
207958964-207959027
64
MCP_HUMAN
355-376
22
0
-
-
1.9b
ENST00000358170
9b
ENSE00001162717
chr1:
207963598-207963690
93
MCP_HUMAN
376-392
17
0
-
-
1.10e
ENST00000358170
10e
ENSE00001643557
chr1:
207966864-207968858
1995
MCP_HUMAN
-
0
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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