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1HQG
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE H141C ARGINASE VARIANT COMPLEXED WITH PRODUCTS ORNITHINE AND UREA
Authors
:
J. D. Cox, E. Cama, D. M. Colleluori, D. E. Ash, D. W. Christianson
Date
:
16 Dec 00 (Deposition) - 04 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Binuclear Manganese Cluster, Product, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Cox, E. Cama, D. M. Colleluori, S. Pethe, J. L. Boucher, D. Mansuy, D. E. Ash, D. W. Christianson
Mechanistic And Metabolic Inferences From The Binding Of Substrate Analogues And Products To Arginase.
Biochemistry V. 40 2689 2001
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
1b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
1c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
3a: L-ORNITHINE (ORNa)
3b: L-ORNITHINE (ORNb)
3c: L-ORNITHINE (ORNc)
4a: UREA (UREa)
4b: UREA (UREb)
4c: UREA (UREc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CME
3
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
2
MN
6
Ligand/Ion
MANGANESE (II) ION
3
ORN
3
Ligand/Ion
L-ORNITHINE
4
URE
3
Ligand/Ion
UREA
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:101 , ASP A:124 , ASP A:128 , ASP A:232 , MN A:501 , HOH A:604 , URE A:1901
BINDING SITE FOR RESIDUE MN A 500
02
AC2
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:500 , HOH A:604 , URE A:1901
BINDING SITE FOR RESIDUE MN A 501
03
AC3
SOFTWARE
HIS B:101 , ASP B:124 , ASP B:128 , ASP B:232 , MN B:503 , HOH B:660 , URE B:1902
BINDING SITE FOR RESIDUE MN B 502
04
AC4
SOFTWARE
ASP B:124 , HIS B:126 , ASP B:232 , ASP B:234 , MN B:502 , HOH B:660 , URE B:1902
BINDING SITE FOR RESIDUE MN B 503
05
AC5
SOFTWARE
HIS C:101 , ASP C:124 , ASP C:128 , ASP C:232 , MN C:505 , HOH C:714 , URE C:1903
BINDING SITE FOR RESIDUE MN C 504
06
AC6
SOFTWARE
ASP C:124 , HIS C:126 , ASP C:232 , ASP C:234 , MN C:504 , HOH C:714 , URE C:1903
BINDING SITE FOR RESIDUE MN C 505
07
AC7
SOFTWARE
HIS A:126 , ASP A:128 , ASN A:130 , SER A:137 , CME A:141 , ASP A:183 , GLU A:186 , HOH A:604 , HOH A:641 , HOH A:642 , URE A:1901
BINDING SITE FOR RESIDUE ORN A 801
08
AC8
SOFTWARE
HIS B:126 , ASP B:128 , ASN B:130 , SER B:137 , CME B:141 , ASP B:183 , GLU B:186 , HOH B:660 , HOH B:696 , HOH B:697 , URE B:1902
BINDING SITE FOR RESIDUE ORN B 902
09
AC9
SOFTWARE
HIS C:126 , ASP C:128 , ASN C:130 , SER C:137 , CME C:141 , ASP C:183 , GLU C:186 , HOH C:714 , HOH C:752 , HOH C:753 , URE C:1903
BINDING SITE FOR RESIDUE ORN C 903
10
BC1
SOFTWARE
HIS A:101 , ASP A:128 , CME A:141 , ASP A:232 , ASP A:234 , GLU A:277 , MN A:500 , MN A:501 , HOH A:604 , HOH A:644 , ORN A:801
BINDING SITE FOR RESIDUE URE A 1901
11
BC2
SOFTWARE
HIS B:101 , ASP B:128 , CME B:141 , ASP B:232 , ASP B:234 , GLU B:277 , MN B:502 , MN B:503 , HOH B:660 , HOH B:699 , ORN B:902
BINDING SITE FOR RESIDUE URE B 1902
12
BC3
SOFTWARE
HIS C:101 , ASP C:128 , CME C:141 , ASP C:232 , ASP C:234 , GLU C:277 , MN C:504 , MN C:505 , HOH C:714 , HOH C:755 , ORN C:903
BINDING SITE FOR RESIDUE URE C 1903
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:230-251,B:230-251,C:230-251)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_RAT
230-251
3
A:230-251
B:230-251
C:230-251
[
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Exons
(8, 24)
Info
All Exons
Exon 1.1 (A:6-19 | B:6-19 | C:6-19)
Exon 1.2 (A:20-44 | B:20-44 | C:20-44)
Exon 1.3 (A:44-102 | B:44-102 | C:44-102)
Exon 1.4 (A:102-155 | B:102-155 | C:102-155)
Exon 1.5 (A:156-187 | B:156-187 | C:156-187)
Exon 1.6 (A:187-222 | B:187-222 | C:187-222)
Exon 1.7 (A:222-268 | B:222-268 | C:222-268)
Exon 1.8 (A:268-319 | B:268-319 | C:268-319)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017911
1
ENSRNOE00000127362
chr1:
20998894-20999025
132
ARGI1_RAT
1-19
19
3
A:6-19
B:6-19
C:6-19
14
14
14
1.2
ENSRNOT00000017911
2
ENSRNOE00000127505
chr1:
21003810-21003882
73
ARGI1_RAT
20-44
25
3
A:20-44
B:20-44
C:20-44
25
25
25
1.3
ENSRNOT00000017911
3
ENSRNOE00000127596
chr1:
21005814-21005988
175
ARGI1_RAT
44-102
59
3
A:44-102
B:44-102
C:44-102
59
59
59
1.4
ENSRNOT00000017911
4
ENSRNOE00000126918
chr1:
21008032-21008191
160
ARGI1_RAT
102-155
54
3
A:102-155
B:102-155
C:102-155
54
54
54
1.5
ENSRNOT00000017911
5
ENSRNOE00000126971
chr1:
21009513-21009607
95
ARGI1_RAT
156-187
32
3
A:156-187
B:156-187
C:156-187
32
32
32
1.6
ENSRNOT00000017911
6
ENSRNOE00000127033
chr1:
21010045-21010149
105
ARGI1_RAT
187-222
36
3
A:187-222
B:187-222
C:187-222
36
36
36
1.7
ENSRNOT00000017911
7
ENSRNOE00000127086
chr1:
21010337-21010473
137
ARGI1_RAT
222-268
47
3
A:222-268
B:222-268
C:222-268
47
47
47
1.8
ENSRNOT00000017911
8
ENSRNOE00000127695
chr1:
21010716-21011266
551
ARGI1_RAT
268-323
56
3
A:268-319
B:268-319
C:268-319
52
52
52
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1hqga_ (A:)
1b: SCOP_d1hqgb_ (B:)
1c: SCOP_d1hqgc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(34)
1a
d1hqga_
A:
1b
d1hqgb_
B:
1c
d1hqgc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1hqgA00 (A:6-319)
1b: CATH_1hqgB00 (B:6-319)
1c: CATH_1hqgC00 (C:6-319)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Norway rat (Rattus norvegicus)
(31)
1a
1hqgA00
A:6-319
1b
1hqgB00
B:6-319
1c
1hqgC00
C:6-319
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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