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1HPU
Biol. Unit 3
Info
Asym.Unit (363 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (95 KB)
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(1)
Title
:
5'-NUCLEOTIDASE (CLOSED FORM), COMPLEX WITH AMPCP
Authors
:
T. Knoefel, N. Straeter
Date
:
13 Dec 00 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Metalloenzyme, Metallophosphatase, Domain Rotation, Domain Movement, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Knofel, N. Strater
Mechanism Of Hydrolysis Of Phosphate Esters By The Dimetal Center Of 5'-Nucleotidase Based On Crystal Structures.
J. Mol. Biol. V. 309 239 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12a)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12b)
1c: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12c)
1d: PHOSPHOMETHYLPHOSPHONIC ACID ADENO... (A12d)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
A12
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(3, 3)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASP C:84 , ASN C:116 , HIS C:217 , HIS C:252 , MN C:601 , A12 C:1604 , HOH C:1681
BINDING SITE FOR RESIDUE MN C 600
2
AC6
SOFTWARE
ASP C:41 , HIS C:43 , ASP C:84 , GLN C:254 , MN C:600 , HOH C:1681 , HOH C:1885
BINDING SITE FOR RESIDUE MN C 601
3
BC2
SOFTWARE
ASP C:84 , ASN C:116 , HIS C:117 , ILE C:178 , HIS C:252 , ARG C:375 , ARG C:379 , SER C:405 , GLY C:407 , ARG C:410 , PHE C:429 , ASN C:431 , GLY C:458 , PHE C:498 , ASP C:504 , MN C:600 , HOH C:1679 , HOH C:1681 , HOH C:1693 , HOH C:1795 , HOH C:1797 , HOH C:1808 , HOH C:1885
BINDING SITE FOR RESIDUE A12 C 1604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (C:34-46)
2: 5_NUCLEOTIDASE_2 (C:109-120)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
1
-
-
C:34-46
-
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
1
-
-
C:109-120
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1hpua1 (A:363-550)
1b: SCOP_d1hpub1 (B:363-550)
1c: SCOP_d1hpuc1 (C:363-550)
1d: SCOP_d1hpud1 (D:363-550)
2a: SCOP_d1hpua2 (A:26-362)
2b: SCOP_d1hpub2 (B:26-362)
2c: SCOP_d1hpuc2 (C:26-362)
2d: SCOP_d1hpud2 (D:26-362)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1hpua1
A:363-550
1b
d1hpub1
B:363-550
1c
d1hpuc1
C:363-550
1d
d1hpud1
D:363-550
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1hpua2
A:26-362
2b
d1hpub2
B:26-362
2c
d1hpuc2
C:26-362
2d
d1hpud2
D:26-362
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1hpuA01 (A:26-362)
1b: CATH_1hpuB01 (B:26-362)
1c: CATH_1hpuC01 (C:26-362)
1d: CATH_1hpuD01 (D:26-362)
2a: CATH_1hpuA02 (A:363-549)
2b: CATH_1hpuB02 (B:363-549)
2c: CATH_1hpuC02 (C:363-549)
2d: CATH_1hpuD02 (D:363-549)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1hpuA01
A:26-362
1b
1hpuB01
B:26-362
1c
1hpuC01
C:26-362
1d
1hpuD01
D:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1hpuA02
A:363-549
2b
1hpuB02
B:363-549
2c
1hpuC02
C:363-549
2d
1hpuD02
D:363-549
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Pfam Domains
(0, 0)
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (363 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
Biol.Unit 3 (95 KB)
Header - Biol.Unit 3
Biol.Unit 4 (95 KB)
Header - Biol.Unit 4
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