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1HP1
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
5'-NUCLEOTIDASE (OPEN FORM) COMPLEX WITH ATP
Authors
:
T. Knoefel, N. Straeter
Date
:
12 Dec 00 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metallophosphatase, Dinuclear, Metalloenzyme, Hydrolase, Domain Movement
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Knofel, N. Strater
Mechanism Of Hydrolysis Of Phosphate Esters By The Dimetal Center Of 5'-Nucleotidase Based On Crystal Structures.
J. Mol. Biol. V. 309 239 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CARBONATE ION (CO3a)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CO3
1
Ligand/Ion
CARBONATE ION
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:41 , HIS A:43 , ASP A:84 , GLN A:254 , ZN A:601 , CO3 A:602
BINDING SITE FOR RESIDUE ZN A 600
2
AC2
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , ZN A:600 , CO3 A:602
BINDING SITE FOR RESIDUE ZN A 601
3
AC3
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:117 , HIS A:252 , GLN A:254 , THR A:518 , GLY A:519 , ZN A:600 , ZN A:601 , HOH A:949
BINDING SITE FOR RESIDUE CO3 A 602
4
AC4
SOFTWARE
TRP A:47 , ARG A:48 , HOH A:1196 , HOH A:1223 , HOH A:1224 , HOH A:1381
BINDING SITE FOR RESIDUE SO4 A 603
5
AC5
SOFTWARE
ASN A:342 , GLN A:343 , HOH A:806 , HOH A:854 , HOH A:1166
BINDING SITE FOR RESIDUE SO4 A 604
6
AC6
SOFTWARE
LYS A:68 , GLY A:148 , ARG A:190 , HOH A:973 , HOH A:1056 , HOH A:1089 , HOH A:1264 , HOH A:1317
BINDING SITE FOR RESIDUE SO4 A 605
7
AC7
SOFTWARE
ARG A:375 , ARG A:379 , GLY A:407 , ARG A:410 , PHE A:429 , ASN A:431 , GLY A:458 , PHE A:498 , ASP A:504 , HOH A:1133 , HOH A:1363
BINDING SITE FOR RESIDUE ATP A 606
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (A:34-46)
2: 5_NUCLEOTIDASE_2 (A:109-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
1
A:34-46
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
1
A:109-120
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1hp1a1 (A:363-550)
2a: SCOP_d1hp1a2 (A:26-362)
View:
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Classes
(
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(
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Folds
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)
(
)
Superfamilies
(
)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1hp1a1
A:363-550
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1hp1a2
A:26-362
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1hp1A01 (A:26-362)
2a: CATH_1hp1A02 (A:363-549)
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1hp1A01
A:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1hp1A02
A:363-549
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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