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1HO5
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
5'-NUCLEOTIDASE (E. COLI) IN COMPLEX WITH ADENOSINE AND PHOSPHATE
Authors
:
T. Knoefel, N. Straeter
Date
:
08 Dec 00 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Domain Movement, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Knofel, N. Strater
Mechanism Of Hydrolysis Of Phosphate Esters By The Dimetal Center Of 5'-Nucleotidase Based On Crystal Structures.
J. Mol. Biol. V. 309 239 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ADENOSINE (ADNa)
1b: ADENOSINE (ADNb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADN
2
Ligand/Ion
ADENOSINE
2
MN
4
Ligand/Ion
MANGANESE (II) ION
3
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:41 , HIS A:43 , ASP A:84 , GLN A:254 , MN A:1602 , HOH A:1775 , HOH A:1823
BINDING SITE FOR RESIDUE MN A 1601
2
AC2
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , MN A:1601 , PO4 A:1603 , HOH A:1823
BINDING SITE FOR RESIDUE MN A 1602
3
AC3
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:117 , HIS A:252 , ARG A:375 , MN A:1602 , ADN A:1604 , HOH A:1741 , HOH A:1775 , HOH A:1823
BINDING SITE FOR RESIDUE PO4 A 1603
4
AC4
SOFTWARE
ASP B:41 , HIS B:43 , ASP B:84 , GLN B:254 , MN B:2602 , HOH B:2704
BINDING SITE FOR RESIDUE MN B 2601
5
AC5
SOFTWARE
ASP B:84 , ASN B:116 , HIS B:217 , HIS B:252 , MN B:2601 , PO4 B:2603 , HOH B:2704
BINDING SITE FOR RESIDUE MN B 2602
6
AC6
SOFTWARE
ASP B:84 , ASN B:116 , HIS B:117 , ILE B:178 , HIS B:252 , MN B:2602 , ADN B:2604 , HOH B:2704 , HOH B:2718
BINDING SITE FOR RESIDUE PO4 B 2603
7
AC7
SOFTWARE
ILE A:178 , SER A:405 , GLY A:407 , PHE A:429 , ASN A:431 , GLY A:458 , PHE A:498 , ASP A:504 , PO4 A:1603 , HOH A:1756
BINDING SITE FOR RESIDUE ADN A 1604
8
AC8
SOFTWARE
ILE B:178 , ASN B:180 , SER B:405 , GLY B:407 , ARG B:410 , PHE B:429 , ASN B:431 , GLY B:458 , PHE B:498 , ASP B:504 , PO4 B:2603 , HOH B:2718
BINDING SITE FOR RESIDUE ADN B 2604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (A:34-46,B:34-46)
2: 5_NUCLEOTIDASE_2 (A:109-120,B:109-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
2
A:34-46
B:34-46
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
2
A:109-120
B:109-120
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ho5a1 (A:363-550)
1b: SCOP_d1ho5b1 (B:363-550)
2a: SCOP_d1ho5a2 (A:26-362)
2b: SCOP_d1ho5b2 (B:26-362)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1ho5a1
A:363-550
1b
d1ho5b1
B:363-550
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1ho5a2
A:26-362
2b
d1ho5b2
B:26-362
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ho5A01 (A:26-362)
1b: CATH_1ho5B01 (B:26-362)
2a: CATH_1ho5A02 (A:363-549)
2b: CATH_1ho5B02 (B:363-549)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1ho5A01
A:26-362
1b
1ho5B01
B:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1ho5A02
A:363-549
2b
1ho5B02
B:363-549
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (180 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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