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1HMD
Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (166 KB)
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(1)
Title
:
THE STRUCTURE OF DEOXY AND OXY HEMERYTHRIN AT 2.0 ANGSTROMS RESOLUTION
Authors
:
M. A. Holmes, I. Letrong, S. Turley, L. C. Sieker, R. E. Stenkamp
Date
:
18 Oct 90 (Deposition) - 15 Jan 92 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (4x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: C,D (4x)
Keywords
:
Oxygen Transport
(Keyword Search:
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Reference
:
M. A. Holmes, I. Le Trong, S. Turley, L. C. Sieker, R. E. Stenkamp
Structures Of Deoxy And Oxy Hemerythrin At 2. 0 A Resolution
J. Mol. Biol. V. 218 583 1991
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: MU-OXO-DIIRON (FEOa)
2b: MU-OXO-DIIRON (FEOb)
2c: MU-OXO-DIIRON (FEOc)
2d: MU-OXO-DIIRON (FEOd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
FEO
4
Ligand/Ion
MU-OXO-DIIRON
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:60 , SER A:64
BINDING SITE FOR RESIDUE ACE A 114
2
AC2
SOFTWARE
HIS A:25 , HIS A:54 , GLU A:58 , HIS A:73 , HIS A:77 , HIS A:101 , ASP A:106 , HOH A:135
BINDING SITE FOR RESIDUE FEO A 115
3
AC3
SOFTWARE
SER B:64 , HOH B:185
BINDING SITE FOR RESIDUE ACE B 114
4
AC4
SOFTWARE
HIS B:25 , HIS B:54 , GLU B:58 , HIS B:73 , HIS B:77 , HIS B:101 , ASP B:106
BINDING SITE FOR RESIDUE FEO B 115
5
AC5
SOFTWARE
SER C:64 , HOH C:211
BINDING SITE FOR RESIDUE ACE C 114
6
AC6
SOFTWARE
HIS C:25 , HIS C:54 , GLU C:58 , HIS C:73 , HIS C:77 , HIS C:101 , ASP C:106 , HOH C:147
BINDING SITE FOR RESIDUE FEO C 115
7
AC7
SOFTWARE
GLN D:60 , SER D:64 , HOH D:293
BINDING SITE FOR RESIDUE ACE D 114
8
AC8
SOFTWARE
HIS D:25 , HIS D:54 , GLU D:58 , HIS D:73 , HIS D:77 , HIS D:101 , ASP D:106
BINDING SITE FOR RESIDUE FEO D 115
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HEMT_THEDY_001 (S64S, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HEMT_THEDY_001
*
A
64
S
HEMT_THEDY
---
---
A/B/C/D
S
64
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HEMERYTHRINS (A:54-77,B:54-77,C:54-77,D:54-77)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMERYTHRINS
PS00550
Hemerythrin family signature.
HEMT_THEDY
54-77
4
A:54-77
B:54-77
C:54-77
D:54-77
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1hmda_ (A:)
1b: SCOP_d1hmdc_ (C:)
1c: SCOP_d1hmdd_ (D:)
1d: SCOP_d1hmdb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Hemerythrin-like
(10)
Family
:
Hemerythrin-like
(10)
Protein domain
:
Hemerythrin
(7)
Sipunculid worm (Themiste dyscritum) [TaxId: 6436]
(4)
1a
d1hmda_
A:
1b
d1hmdc_
C:
1c
d1hmdd_
D:
1d
d1hmdb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1hmdA00 (A:1-113)
1b: CATH_1hmdC00 (C:1-113)
1c: CATH_1hmdD00 (D:1-113)
1d: CATH_1hmdB00 (B:1-113)
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Organisms
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.50, no name defined]
(10)
Themiste dyscritum. Organism_taxid: 6436
(4)
1a
1hmdA00
A:1-113
1b
1hmdC00
C:1-113
1c
1hmdD00
D:1-113
1d
1hmdB00
B:1-113
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (89 KB)
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Biol.Unit 1 (166 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (166 KB)
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