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1HM9
Biol. Unit 2
Info
Asym.Unit (172 KB)
Biol.Unit 1 (246 KB)
Biol.Unit 2 (246 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S.PNEUMONIAE N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE, GLMU, BOUND TO ACETYL COENZYME A AND UDP-N-ACETYLGLUCOSAMINE
Authors
:
G. Sulzenbacher, L. Gal, C. Peneff, F. Fassy, Y. Bourne
Date
:
05 Dec 00 (Deposition) - 30 Nov 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Acetyltransferase, Bifunctional, Drug Design, Pyrophosphorylase, Rossmann-Like Fold, Left-Handed-Beta-Helix, Trimer, Domain- Interchange, Transferase
(Keyword Search:
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Reference
:
G. Sulzenbacher, L. Gal, C. Peneff, F. Fassy, Y. Bourne
Crystal Structure Of Streptococcus Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase Bound To Acetyl-Coenzyme A Reveals A Novel Active Site Architecture.
J. Biol. Chem. V. 276 11844 2001
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
3b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
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No.
Name
Count
Type
Full Name
1
ACO
3
Ligand/Ion
ACETYL COENZYME *A
2
CA
-1
Ligand/Ion
CALCIUM ION
3
UD1
3
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASP A:398 , ASP A:416 , HOH A:1223 , ASP B:160 , HOH B:2320
BINDING SITE FOR RESIDUE CA A 1903
2
AC5
SOFTWARE
ASP B:102 , ASN B:227 , HOH B:2250 , HOH B:2251 , UD1 B:2500
BINDING SITE FOR RESIDUE CA B 2901
3
AC6
SOFTWARE
ARG B:15 , HOH B:2208 , HOH B:2216 , HOH B:2252 , UD1 B:2500
BINDING SITE FOR RESIDUE CA B 2902
4
AC7
SOFTWARE
ASP A:160 , HOH A:1339 , ASP B:398 , ASP B:416 , HOH B:2326
BINDING SITE FOR RESIDUE CA B 2903
5
AC8
SOFTWARE
ASN B:405 , HOH B:2254
BINDING SITE FOR RESIDUE CA B 2904
6
BC1
SOFTWARE
HIS B:362 , GLY B:378 , ALA B:379 , ILE B:382 , THR B:383 , VAL B:384 , ASN B:385 , TYR B:386 , PHE B:401 , GLY B:403 , SER B:404 , ILE B:409 , GLY B:421 , ALA B:422 , ILE B:437 , ARG B:439 , ARG B:441 , ILE B:443 , LYS B:445 , TYR B:448 , HOH B:2053 , HOH B:2090 , HOH B:2115 , HOH B:2158 , HOH B:2172 , HOH B:2191 , HOH B:2258 , HOH B:2273
BINDING SITE FOR RESIDUE ACO B 2900
7
BC3
SOFTWARE
LEU B:8 , ALA B:9 , ALA B:10 , GLY B:11 , ARG B:15 , LYS B:22 , GLN B:72 , GLN B:75 , LEU B:76 , GLY B:77 , THR B:78 , GLY B:101 , ASP B:102 , TYR B:138 , GLY B:139 , GLU B:154 , ASN B:169 , THR B:170 , TYR B:197 , ILE B:198 , THR B:199 , ASN B:227 , HOH B:2012 , HOH B:2016 , HOH B:2033 , HOH B:2102 , HOH B:2107 , HOH B:2250 , HOH B:2251 , HOH B:2252 , CA B:2901 , CA B:2902
BINDING SITE FOR RESIDUE UD1 B 2500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (B:402-430)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_STRPN
402-430
3
-
B:402-430
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hm9a1 (A:252-459)
1b: SCOP_d1hm9b1 (B:252-459)
2a: SCOP_d1hm9a2 (A:2-251)
2b: SCOP_d1hm9b2 (B:2-251)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
GlmU C-terminal domain-like
(22)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
(12)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(5)
1a
d1hm9a1
A:252-459
1b
d1hm9b1
B:252-459
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
(12)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(5)
2a
d1hm9a2
A:2-251
2b
d1hm9b2
B:2-251
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1hm9A01 (A:2-251)
1b: CATH_1hm9B01 (B:2-251)
2a: CATH_1hm9A02 (A:252-440)
2b: CATH_1hm9B02 (B:252-440)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Streptococcus pneumoniae. Organism_taxid: 1313.
(5)
1a
1hm9A01
A:2-251
1b
1hm9B01
B:2-251
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Streptococcus pneumoniae. Organism_taxid: 1313.
(3)
2a
1hm9A02
A:252-440
2b
1hm9B02
B:252-440
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Pfam Domains
(0, 0)
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Chain B
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (172 KB)
Header - Asym.Unit
Biol.Unit 1 (246 KB)
Header - Biol.Unit 1
Biol.Unit 2 (246 KB)
Header - Biol.Unit 2
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