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1HM3
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS
Authors
:
W. Huang, L. Boju, L. Tkalec, H. Su, H. O. Yang, N. S. Gunay, R. J. Linhardt A. Matte, M. Cygler
Date
:
04 Dec 00 (Deposition) - 02 May 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Oligosaccharide Complex, Active Site, Catalysis, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Huang, L. Boju, L. Tkalec, H. Su, H. O. Yang, N. S. Gunay, R. J. Linhardt, Y. S. Kim, A. Matte, M. Cygler
Active Site Of Chondroitin Ac Lyase Revealed By The Structure Of Enzyme-Oligosaccharide Complexes And Mutagenesis.
Biochemistry V. 40 2359 2001
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Hetero Components
(8, 11)
Info
All Hetero Components
1a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
2a: CALCIUM ION (CAa)
3a: D-GLUCURONIC ACID (GCUa)
3b: D-GLUCURONIC ACID (GCUb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: 2-O-METHYL FUCOSE (MXYa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7a: ALPHA-L-RHAMNOSE (RAMa)
7b: ALPHA-L-RHAMNOSE (RAMb)
8a: BETA-D-XYLOPYRANOSE (XYPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BDP
1
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
2
CA
1
Ligand/Ion
CALCIUM ION
3
GCU
2
Ligand/Ion
D-GLUCURONIC ACID
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
MXY
1
Ligand/Ion
2-O-METHYL FUCOSE
6
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
RAM
2
Ligand/Ion
ALPHA-L-RHAMNOSE
8
XYP
1
Ligand/Ion
BETA-D-XYLOPYRANOSE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:455 , ASN A:479 , RAM A:702 , GCU A:703
BINDING SITE FOR RESIDUE MAN A 701
02
AC2
SOFTWARE
MAN A:701
BINDING SITE FOR RESIDUE RAM A 702
03
AC3
SOFTWARE
ARG A:415 , ARG A:421 , MAN A:701 , XYP A:704 , HOH A:813
BINDING SITE FOR RESIDUE GCU A 703
04
AC4
SOFTWARE
GCU A:703 , MXY A:705
BINDING SITE FOR RESIDUE XYP A 704
05
AC5
SOFTWARE
XYP A:704
BINDING SITE FOR RESIDUE MXY A 705
06
AC6
SOFTWARE
SER A:328 , VAL A:330 , ALA A:331 , VAL A:669 , LYS A:684 , RAM A:707 , GCU A:708 , HOH A:828 , HOH A:1024
BINDING SITE FOR RESIDUE MAN A 706
07
AC7
SOFTWARE
MAN A:706 , HOH A:892
BINDING SITE FOR RESIDUE RAM A 707
08
AC8
SOFTWARE
LYS A:299 , MAN A:706 , HOH A:1024
BINDING SITE FOR RESIDUE GCU A 708
09
AC9
SOFTWARE
TRP A:127 , TYR A:234 , ARG A:288 , ARG A:292 , BDP A:710 , HOH A:773 , HOH A:866 , HOH A:883 , HOH A:1023
BINDING SITE FOR RESIDUE NAG A 709
10
BC1
SOFTWARE
ARG A:292 , NAG A:709
BINDING SITE FOR RESIDUE BDP A 710
11
BC2
SOFTWARE
GLU A:405 , ASP A:407 , ASP A:416 , TYR A:417 , HOH A:829 , HOH A:979
BINDING SITE FOR RESIDUE CA A 1801
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1hm3a1 (A:26-335)
2a: SCOP_d1hm3a2 (A:600-699)
3a: SCOP_d1hm3a3 (A:336-599)
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Classes
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Folds
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Chondroitin AC/alginate lyase
(45)
Family
:
Hyaluronate lyase-like catalytic, N-terminal domain
(40)
Protein domain
:
Chondroitinase AC
(11)
Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
(5)
1a
d1hm3a1
A:26-335
Class
:
All beta proteins
(24004)
Fold
:
Hyaluronate lyase-like, C-terminal domain
(40)
Superfamily
:
Hyaluronate lyase-like, C-terminal domain
(40)
Family
:
Hyaluronate lyase-like, C-terminal domain
(35)
Protein domain
:
Chondroitinase AC
(11)
Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
(5)
2a
d1hm3a2
A:600-699
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Hyaluronate lyase-like, central domain
(35)
Protein domain
:
Chondroitinase AC
(11)
Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
(5)
3a
d1hm3a3
A:336-599
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1hm3A01 (A:27-338)
2a: CATH_1hm3A02 (A:344-589)
3a: CATH_1hm3A03 (A:590-699)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.100, no name defined]
(43)
Pedobacter heparinus. Organism_taxid: 984.
(4)
1a
1hm3A01
A:27-338
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Pedobacter heparinus. Organism_taxid: 984.
(4)
2a
1hm3A02
A:344-589
Architecture
:
Sandwich
(5577)
Topology
:
Chondroitinase Ac; Chain A, domain 3
(40)
Homologous Superfamily
:
Chondroitinase Ac; Chain A, domain 3
(40)
Pedobacter heparinus. Organism_taxid: 984.
(4)
3a
1hm3A03
A:590-699
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (123 KB)
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