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1HKJ
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CHITINASE IN COMPLEX WITH METHYLALLOSAMIDIN
Authors
:
F. V. Rao, D. R. Houston, R. G. Boot, J. M. F. G. Aerts, S. Sakuda, D. M. F. Van Aalten
Date
:
10 Mar 03 (Deposition) - 11 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Human Chitinase, Hydrolase, Allosamidin, Methylallosamidin, Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. V. Rao, D. R. Houston, R. G. Boot, J. M. F. G. Aerts, S. Sakuda, D. M. F. Van Aalten
Crystal Structures Of Allosamidin Derivatives In Complex With Human Macrophage Chitinase
J. Biol. Chem. V. 278 20110 2003
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ALLOSAMIZOLINE (AMIa)
2a: METHYL N-ACETYL ALLOSAMINE (NA1a)
3a: N-ACETYL-D-ALLOSAMINE (NAAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMI
1
Ligand/Ion
ALLOSAMIZOLINE
2
NA1
1
Ligand/Ion
METHYL N-ACETYL ALLOSAMINE
3
NAA
1
Ligand/Ion
N-ACETYL-D-ALLOSAMINE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:31 , GLY A:98 , TRP A:99 , ASN A:100 , GLU A:297 , MET A:300 , TRP A:358 , NA1 A:1387 , AMI A:1389 , HOH A:2019 , HOH A:2046
BINDING SITE FOR RESIDUE NAA A1388
2
AC2
SOFTWARE
TRP A:31 , ARG A:35 , ASN A:100 , GLU A:297 , ARG A:374 , GLN A:383 , NAA A:1388 , HOH A:2011 , HOH A:2037 , HOH A:2046
BINDING SITE FOR RESIDUE NA1 A1387
3
AC3
SOFTWARE
TYR A:27 , TRP A:99 , ASP A:138 , GLU A:140 , ALA A:183 , MET A:210 , TYR A:212 , ASP A:213 , TYR A:267 , TRP A:358 , NAA A:1388
BINDING SITE FOR RESIDUE AMI A1389
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049190 (R40H, chain A, )
2: VAR_065914 (E74K, chain A, )
3: VAR_022138 (G102S, chain A, )
4: VAR_049191 (Q171H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049190
R
40
H
CHIT1_HUMAN
Polymorphism
35920428
A
R
40
H
2
UniProt
VAR_065914
E
74
K
CHIT1_HUMAN
Polymorphism
137852607
A
E
74
K
3
UniProt
VAR_022138
G
102
S
CHIT1_HUMAN
Polymorphism
2297950
A
G
102
S
4
UniProt
VAR_049191
Q
171
H
CHIT1_HUMAN
Polymorphism
12562058
A
Q
171
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CHITINASE_18 (A:132-140)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHITINASE_18
PS01095
Chitinases family 18 active site.
CHIT1_HUMAN
132-140
1
A:132-140
[
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Exons
(9, 9)
Info
All Exons
Exon 1.10 (A:22-86)
Exon 1.11 (A:86-105)
Exon 1.12b (A:105-160)
Exon 1.13 (A:161-202)
Exon 1.14a (A:202-243)
Exon 1.15a (A:244-305)
Exon 1.16 (A:306-343)
Exon 1.17c (A:344-386)
Exon 1.19c (A:386-386)
View:
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All Exon Boundaries
01: Boundary 1.9/1.10
02: Boundary 1.10/1.11
03: Boundary 1.11/1.12b
04: Boundary 1.12b/1.13
05: Boundary 1.13/1.14a
06: Boundary 1.14a/1.15a
07: Boundary 1.15a/1.16
08: Boundary 1.16/1.17c
09: Boundary 1.17c/1.19c
10: Boundary 1.19c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.8a
ENST00000367229
8a
ENSE00001443882
chr1:
203198799-203198740
60
CHIT1_HUMAN
1-9
9
0
-
-
1.9
ENST00000367229
9
ENSE00001608418
chr1:
203197690-203197661
30
CHIT1_HUMAN
9-19
11
0
-
-
1.10
ENST00000367229
10
ENSE00001767547
chr1:
203194998-203194797
202
CHIT1_HUMAN
19-86
68
1
A:22-86
65
1.11
ENST00000367229
11
ENSE00001697138
chr1:
203194232-203194176
57
CHIT1_HUMAN
86-105
20
1
A:86-105
20
1.12b
ENST00000367229
12b
ENSE00001666970
chr1:
203192788-203192623
166
CHIT1_HUMAN
105-160
56
1
A:105-160
56
1.13
ENST00000367229
13
ENSE00000907172
chr1:
203192387-203192263
125
CHIT1_HUMAN
161-202
42
1
A:161-202
42
1.14a
ENST00000367229
14a
ENSE00001687399
chr1:
203191453-203191330
124
CHIT1_HUMAN
202-243
42
1
A:202-243
42
1.15a
ENST00000367229
15a
ENSE00000907170
chr1:
203188977-203188792
186
CHIT1_HUMAN
244-305
62
1
A:244-305
62
1.16
ENST00000367229
16
ENSE00000907169
chr1:
203188457-203188344
114
CHIT1_HUMAN
306-343
38
1
A:306-343
38
1.17c
ENST00000367229
17c
ENSE00001130578
chr1:
203186993-203186867
127
CHIT1_HUMAN
344-386
43
1
A:344-386
43
1.19c
ENST00000367229
19c
ENSE00001443883
chr1:
203186261-203185207
1055
CHIT1_HUMAN
386-466
81
1
A:386-386
1
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1hkja2 (A:267-334)
2a: SCOP_d1hkja1 (A:22-266,A:335-386)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitotriosidase
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d1hkja2
A:267-334
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitotriosidase
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1hkja1
A:22-266,A:335-386
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1hkjA01 (A:22-266,A:335-386)
2a: CATH_1hkjA02 (A:267-334)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Human (Homo sapiens)
(94)
1a
1hkjA01
A:22-266,A:335-386
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Human (Homo sapiens)
(19)
2a
1hkjA02
A:267-334
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain A
Asymmetric Unit 1
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