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1HJW
Biol. Unit 1
Info
Asym.Unit (138 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HCGP-39 IN COMPLEX WITH CHITIN OCTAMER
Authors
:
D. R. Houston, A. D. Recklies, J. C. Krupa, D. M. F. Van Aalten
Date
:
28 Feb 03 (Deposition) - 11 Mar 03 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sugar Binding Protein, Lectin, Chi-Lectin, Chitinase, Chondrocyte
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Houston, A. D. Recklies, J. C. Krupa, D. M. F. Van Aalten
Structure And Ligand-Induced Conformational Change Of The 39-Kda Glycoprotein From Human Articular Chondrocytes
J. Biol. Chem. V. 278 30206 2003
[
close entry info
]
Hetero Components
(3, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:233 , HOH A:2098 , ARG B:224 , GLU B:227 , ARG B:233
BINDING SITE FOR RESIDUE SO4 A1392
02
AC2
SOFTWARE
LYS A:182 , ARG A:233 , TYR A:239 , ARG A:246 , GLU B:227
BINDING SITE FOR RESIDUE SO4 A1394
03
AC3
SOFTWARE
ARG A:117 , LYS A:121
BINDING SITE FOR RESIDUE SO4 A1396
04
AC4
SOFTWARE
GLU A:227 , ARG B:233 , TYR B:239 , ARG B:246 , HOH B:2159
BINDING SITE FOR RESIDUE SO4 B1386
05
AC5
SOFTWARE
ALA A:211 , SER A:279 , GLY A:280 , HOH A:2174 , ARG B:144
BINDING SITE FOR RESIDUE GOL A1386
06
AC6
SOFTWARE
NAG A:2 , TRP A:212
BINDING SITE FOR RESIDUE GOL A1387
07
AC7
SOFTWARE
PHE A:42 , ASP A:44
BINDING SITE FOR RESIDUE GOL A1388
08
AC8
SOFTWARE
TYR A:34 , TRP A:71 , HOH A:2175 , HOH A:2176
BINDING SITE FOR RESIDUE GOL A1389
09
AC9
SOFTWARE
GLN A:315 , HOH A:2177 , HOH A:2178 , GLN B:315 , HOH B:2136
BINDING SITE FOR RESIDUE GOL A1399
10
BC3
SOFTWARE
ASN A:60 , ILE A:61 , SER A:62 , HOH A:2028 , HOH A:2171
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1384 THROUGH NDG A1385 BOUND TO ASN A 60
11
BC5
SOFTWARE
NAG A:-1 , TRP A:99 , TYR A:141 , GLY A:181 , MET A:204 , ASP A:207 , PHE A:208 , ARG A:263 , GOL A:1387 , HOH A:2006 , HOH A:2007 , HOH A:2008 , HOH A:2084
BINDING SITE FOR DI-SACCHARIDE NAG A 1 AND NAG A 2
12
BC6
SOFTWARE
NAG A:-2 , NAG A:2 , TYR A:27 , TRP A:99 , LEU A:140 , TYR A:141 , MET A:204 , TYR A:206 , ASP A:207 , ARG A:263 , TRP A:352 , HOH A:2006
BINDING SITE FOR DI-SACCHARIDE NAG A -1 AND NAG A 1
13
BC7
SOFTWARE
NAG A:-3 , NAG A:1 , TYR A:27 , TRP A:31 , GLY A:98 , TRP A:99 , ASN A:100 , LEU A:140 , MET A:204 , TYR A:206 , ASP A:207 , ARG A:263 , TRP A:352 , LEU A:356 , HOH A:2001 , HOH A:2002 , HOH A:2003 , HOH A:2004
BINDING SITE FOR DI-SACCHARIDE NAG A -2 AND NAG A -1
14
BC8
SOFTWARE
NAG A:-4 , NAG A:-1 , TRP A:31 , GLY A:98 , TRP A:99 , ASN A:100 , ARG A:263 , TRP A:352 , LEU A:356 , HOH A:2001 , HOH A:2002 , HOH A:2003 , HOH A:2004
BINDING SITE FOR DI-SACCHARIDE NAG A -3 AND NAG A -2
15
BC9
SOFTWARE
NAG A:-2 , TRP A:31 , TYR A:34 , GLU A:70 , ASN A:100 , HOH A:2004 , HOH A:2005
BINDING SITE FOR DI-SACCHARIDE NAG A -4 AND NAG A -3
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_019838 (R145G, chain A, )
2: VAR_019839 (I311T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019838
R
145
G
CH3L1_HUMAN
Polymorphism
880633
A
R
145
G
2
UniProt
VAR_019839
I
311
T
CH3L1_HUMAN
Polymorphism
1049407
A
I
311
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hjwa2 (A:261-328)
1b: SCOP_d1hjwb2 (B:261-328)
2a: SCOP_d1hjwa1 (A:22-260,A:329-383)
2b: SCOP_d1hjwb1 (B:22-260,B:329-383)
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(
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)
(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitinase-3 like protein 1 (GP-39, YKL-40)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1hjwa2
A:261-328
1b
d1hjwb2
B:261-328
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitinase-3 like protein 1 (GP-39, YKL-40)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1hjwa1
A:22-260,A:329-383
2b
d1hjwb1
B:22-260,B:329-383
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1hjwA01 (A:22-259,A:330-383)
1b: CATH_1hjwB01 (B:22-259,B:330-383)
2a: CATH_1hjwA02 (A:260-329)
2b: CATH_1hjwB02 (B:260-329)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Human (Homo sapiens)
(94)
1a
1hjwA01
A:22-259,A:330-383
1b
1hjwB01
B:22-259,B:330-383
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Human (Homo sapiens)
(19)
2a
1hjwA02
A:260-329
2b
1hjwB02
B:260-329
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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