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1HHJ
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
THE ANTIGENIC IDENTITY OF PEPTIDE(SLASH)MHC COMPLEXES: A COMPARISON OF THE CONFORMATION OF FIVE PEPTIDES PRESENTED BY HLA-A2
Authors
:
D. R. Madden, D. N. Garboczi, D. C. Wiley
Date
:
30 Jun 93 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Histocompatibility Antigen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Madden, D. N. Garboczi, D. C. Wiley
The Antigenic Identity Of Peptide-Mhc Complexes: A Comparison Of The Conformations Of Five Viral Peptides Presented By Hla-A2.
Cell(Cambridge, Mass. ) V. 75 693 1993
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(22, 44)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_004334 (F9Y, chain A/D, )
02: VAR_004335 (D30N, chain A/D, )
03: VAR_016726 (A41G, chain A/D, )
04: VAR_004336 (Q43R, chain A/D, )
05: VAR_004337 (K66N, chain A/D, )
06: VAR_016727 (H70Q, chain A/D, )
07: VAR_004338 (T73I, chain A/D, )
08: VAR_016728 (H74D, chain A/D, )
09: VAR_004339 (V95L, chain A/D, )
10: VAR_004340 (R97M, chain A/D, )
11: VAR_004341 (Y99C, chain A/D, )
12: VAR_004342 (Y99F, chain A/D, )
13: VAR_004343 (W107G, chain A/D, )
14: VAR_004344 (M138K, chain A/D, )
15: VAR_004345 (A149T, chain A/D, )
16: VAR_004346 (V152E, chain A/D, )
17: VAR_004348 (L156Q, chain A/D, )
18: VAR_004347 (L156W, chain A/D, )
19: VAR_004349 (T163E, chain A/D, )
20: VAR_016729 (E166D, chain A/D, )
21: VAR_016730 (W167G, chain A/D, )
22: VAR_004350 (A236E, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004334
F
33
Y
1A02_HUMAN
Polymorphism
---
A/D
F
9
Y
02
UniProt
VAR_004335
D
54
N
1A02_HUMAN
Polymorphism
---
A/D
D
30
N
03
UniProt
VAR_016726
A
65
G
1A02_HUMAN
Polymorphism
---
A/D
A
41
G
04
UniProt
VAR_004336
Q
67
R
1A02_HUMAN
Polymorphism
---
A/D
Q
43
R
05
UniProt
VAR_004337
K
90
N
1A02_HUMAN
Polymorphism
---
A/D
K
66
N
06
UniProt
VAR_016727
H
94
Q
1A02_HUMAN
Polymorphism
---
A/D
H
70
Q
07
UniProt
VAR_004338
T
97
I
1A02_HUMAN
Polymorphism
---
A/D
T
73
I
08
UniProt
VAR_016728
H
98
D
1A02_HUMAN
Polymorphism
---
A/D
H
74
D
09
UniProt
VAR_004339
V
119
L
1A02_HUMAN
Polymorphism
---
A/D
V
95
L
10
UniProt
VAR_004340
R
121
M
1A02_HUMAN
Polymorphism
---
A/D
R
97
M
11
UniProt
VAR_004341
Y
123
C
1A02_HUMAN
Polymorphism
---
A/D
Y
99
C
12
UniProt
VAR_004342
Y
123
F
1A02_HUMAN
Polymorphism
---
A/D
Y
99
F
13
UniProt
VAR_004343
W
131
G
1A02_HUMAN
Polymorphism
---
A/D
W
107
G
14
UniProt
VAR_004344
M
162
K
1A02_HUMAN
Polymorphism
---
A/D
M
138
K
15
UniProt
VAR_004345
A
173
T
1A02_HUMAN
Polymorphism
---
A/D
A
149
T
16
UniProt
VAR_004346
V
176
E
1A02_HUMAN
Polymorphism
---
A/D
V
152
E
17
UniProt
VAR_004348
L
180
Q
1A02_HUMAN
Polymorphism
---
A/D
L
156
Q
18
UniProt
VAR_004347
L
180
W
1A02_HUMAN
Polymorphism
---
A/D
L
156
W
19
UniProt
VAR_004349
T
187
E
1A02_HUMAN
Polymorphism
---
A/D
T
163
E
20
UniProt
VAR_016729
E
190
D
1A02_HUMAN
Polymorphism
---
A/D
E
166
D
21
UniProt
VAR_016730
W
191
G
1A02_HUMAN
Polymorphism
---
A/D
W
167
G
22
UniProt
VAR_004350
A
260
E
1A02_HUMAN
Polymorphism
---
A/D
A
236
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,E:78-84,A:257-263,D:257-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
2
B:78-84
E:78-84
1A02_HUMAN
281-287
2
A:257-263
D:257-263
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1hhjb_ (B:)
1b: SCOP_d1hhje_ (E:)
2a: SCOP_d1hhja1 (A:182-275)
2b: SCOP_d1hhjd1 (D:182-275)
3a: SCOP_d1hhja2 (A:1-181)
3b: SCOP_d1hhjd2 (D:1-181)
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)
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)
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d1hhjb_
B:
1b
d1hhje_
E:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Human (Homo sapiens) [TaxId: 9606]
(187)
2a
d1hhja1
A:182-275
2b
d1hhjd1
D:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Human (Homo sapiens), HLA-A2.1 [TaxId: 9606]
(92)
3a
d1hhja2
A:1-181
3b
d1hhjd2
D:1-181
[
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]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1hhjA01 (A:1-181)
1b: CATH_1hhjD01 (D:1-181)
2a: CATH_1hhjB00 (B:0-99)
2b: CATH_1hhjA02 (A:182-275)
2c: CATH_1hhjD02 (D:182-275)
2d: CATH_1hhjE00 (E:0-99)
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(
)
(
)
Architectures
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1hhjA01
A:1-181
1b
1hhjD01
D:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1hhjB00
B:0-99
2b
1hhjA02
A:182-275
2c
1hhjD02
D:182-275
2d
1hhjE00
E:0-99
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (132 KB)
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