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1HH8
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
THE ACTIVE N-TERMINAL REGION OF P67PHOX: STRUCTURE AT 1.8 ANGSTROM RESOLUTION AND BIOCHEMICAL CHARACTERIZATIONS OF THE A128V MUTANT IMPLICATED IN CHRONIC GRANULOMATOUS DISEASE
Authors
:
S. Grizot, F. Fieschi, M. -C. Dagher, E. Pebay-Peyroula
Date
:
21 Dec 00 (Deposition) - 13 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Cycle, Phagocyte Oxidase Factor, Sh3 Domain, Repeat, Tpr Repeat Cell Cycle
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Grizot, F. Fieschi, M. -C. Dagher, E. Pebay-Peyroula
The Active N-Terminal Region Of P67Phox: Structure At 1. 8 Angstrom Resolution And Biochemical Characterizations Of The A128V Mutant Implicated In Chronic Granulomatous Disease
J. Biol. Chem. V. 276 21627 2001
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:6 , ILE A:7 , TRP A:10 , PRO A:35 , HIS A:36 , ARG A:38 , ILE A:39 , LYS A:138 , GLU A:141 , GLU A:142 , HOH A:2158 , HOH A:2159 , HOH A:2160
BINDING SITE FOR RESIDUE FLC A1201
[
close Site info
]
SAPs(SNPs)/Variants
(15, 15)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_065002 (N42S, chain A, )
02: VAR_065003 (G44C, chain A, )
03: VAR_065004 (G44R, chain A, )
04: VAR_017388 (R77Q, chain A, )
05: VAR_008904 (G78E, chain A, )
06: VAR_065006 (M79V, chain A, )
07: VAR_065007 (D93E, chain A, )
08: VAR_065009 (R102P, chain A, )
09: VAR_065010 (D108V, chain A, )
10: VAR_017389 (A128V, chain A, )
11: VAR_065011 (W137R, chain A, )
12: VAR_065012 (A140D, chain A, )
13: VAR_065013 (Q169E, chain A, )
14: VAR_018477 (R181R, chain A, )
15: VAR_065014 (R184P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065002
N
42
S
NCF2_HUMAN
Disease (CGD2)
137854514
A
N
42
S
02
UniProt
VAR_065003
G
44
C
NCF2_HUMAN
Disease (CGD2)
137854510
A
G
44
C
03
UniProt
VAR_065004
G
44
R
NCF2_HUMAN
Disease (CGD2)
137854510
A
G
44
R
04
UniProt
VAR_017388
R
77
Q
NCF2_HUMAN
Disease (CGD2)
119103275
A
R
77
Q
05
UniProt
VAR_008904
G
78
E
NCF2_HUMAN
Disease (CGD2)
137854519
A
G
78
E
06
UniProt
VAR_065006
M
79
V
NCF2_HUMAN
Polymorphism
137854512
A
M
79
V
07
UniProt
VAR_065007
D
93
E
NCF2_HUMAN
Disease (CGD2)
137854507
A
D
93
E
08
UniProt
VAR_065009
R
102
P
NCF2_HUMAN
Disease (CGD2)
137854515
A
R
102
P
09
UniProt
VAR_065010
D
108
V
NCF2_HUMAN
Disease (CGD2)
137854509
A
D
108
V
10
UniProt
VAR_017389
A
128
V
NCF2_HUMAN
Disease (CGD2)
119103274
A
A
128
V
11
UniProt
VAR_065011
W
137
R
NCF2_HUMAN
Disease (CGD2)
137854516
A
W
137
R
12
UniProt
VAR_065012
A
140
D
NCF2_HUMAN
Disease (CGD2)
137854520
A
A
140
D
13
UniProt
VAR_065013
Q
169
E
NCF2_HUMAN
Disease (CGD2)
137854517
A
Q
169
E
14
UniProt
VAR_018477
K
181
R
NCF2_HUMAN
Polymorphism
2274064
A
R
181
R
15
UniProt
VAR_065014
R
184
P
NCF2_HUMAN
Disease (CGD2)
137854518
A
R
184
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TPR (A:37-70|A:71-104|A:121-154)
2: TPR_REGION (A:37-104)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
NCF2_HUMAN
37-70
71-104
121-154
3
A:37-70
A:71-104
A:121-154
2
TPR_REGION
PS50293
TPR repeat region circular profile.
NCF2_HUMAN
37-104
1
A:37-104
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.2c (A:2-58)
Exon 1.3 (A:59-86)
Exon 1.4 (A:86-122)
Exon 1.5 (A:123-167)
Exon 1.6 (A:168-193)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2c
2: Boundary 1.2c/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000367536
1
ENSE00001444961
chr1:
183560011-183559975
37
NCF2_HUMAN
-
0
0
-
-
1.2c
ENST00000367536
2c
ENSE00001444960
chr1:
183559494-183559291
204
NCF2_HUMAN
1-58
58
1
A:2-58
57
1.3
ENST00000367536
3
ENSE00000774250
chr1:
183556112-183556030
83
NCF2_HUMAN
59-86
28
1
A:59-86
28
1.4
ENST00000367536
4
ENSE00000922163
chr1:
183546842-183546734
109
NCF2_HUMAN
86-122
37
1
A:86-122
37
1.5
ENST00000367536
5
ENSE00000922162
chr1:
183543756-183543622
135
NCF2_HUMAN
123-167
45
1
A:123-167
45
1.6
ENST00000367536
6
ENSE00000922161
chr1:
183542427-183542320
108
NCF2_HUMAN
168-203
36
1
A:168-193
26
1.7a
ENST00000367536
7a
ENSE00000922160
chr1:
183539974-183539915
60
NCF2_HUMAN
204-223
20
0
-
-
1.8b
ENST00000367536
8b
ENSE00000774245
chr1:
183538320-183538277
44
NCF2_HUMAN
224-238
15
0
-
-
1.9b
ENST00000367536
9b
ENSE00001592444
chr1:
183536480-183536339
142
NCF2_HUMAN
238-285
48
0
-
-
1.10
ENST00000367536
10
ENSE00000774243
chr1:
183536123-183536055
69
NCF2_HUMAN
286-308
23
0
-
-
1.11
ENST00000367536
11
ENSE00001738087
chr1:
183534914-183534839
76
NCF2_HUMAN
309-334
26
0
-
-
1.12b
ENST00000367536
12b
ENSE00001735809
chr1:
183533165-183533140
26
NCF2_HUMAN
334-342
9
0
-
-
1.12c
ENST00000367536
12c
ENSE00001784834
chr1:
183532720-183532569
152
NCF2_HUMAN
343-393
51
0
-
-
1.13c
ENST00000367536
13c
ENSE00000922153
chr1:
183532441-183532330
112
NCF2_HUMAN
393-430
38
0
-
-
1.14b
ENST00000367536
14b
ENSE00000774239
chr1:
183529408-183529231
178
NCF2_HUMAN
431-490
60
0
-
-
1.15b
ENST00000367536
15b
ENSE00001444959
chr1:
183525365-183524698
668
NCF2_HUMAN
490-526
37
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hh8a_ (A:)
View:
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Classes
(
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Folds
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(
)
Superfamilies
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1hh8a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hh8A00 (A:2-193)
View:
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(
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(
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Human (Homo sapiens)
(17)
1a
1hh8A00
A:2-193
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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