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1HG0
Asym. Unit
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Asym.Unit (220 KB)
Biol.Unit 1 (216 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE COMPLEX BETWEEN ERWINIA CHRYSANTHEMI L-ASPARAGINASE AND SUCCINIC ACID
Authors
:
J. Lubkowski, A. Wlodawer, K. A. Kolyani
Date
:
08 Dec 00 (Deposition) - 07 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Asparaginase, Hydrolase, X-Ray, Structure, Complex, D- Aspartate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. A. Kolyani, A. Wlodawer, J. Lubkowski
Stuctural Basis For The Activity And Substrate Specificity Of Erwinia Chrysanthemi L-Asparaginase
Biochemistry V. 40 5655 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: SUCCINIC ACID (SINa)
1b: SUCCINIC ACID (SINb)
1c: SUCCINIC ACID (SINc)
1d: SUCCINIC ACID (SINd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SIN
4
Ligand/Ion
SUCCINIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:14 , THR A:15 , ALA A:61 , SER A:62 , GLU A:63 , GLY A:94 , THR A:95 , ASP A:96 , ALA A:120 , HOH A:2202
BINDING SITE FOR RESIDUE SIN A 350
2
AC2
SOFTWARE
GLY B:14 , THR B:15 , ALA B:31 , ALA B:61 , SER B:62 , GLY B:94 , THR B:95 , ASP B:96 , ALA B:120 , HOH B:2060 , HOH B:2079
BINDING SITE FOR RESIDUE SIN B 350
3
AC3
SOFTWARE
GLY C:14 , THR C:15 , TYR C:29 , ALA C:61 , SER C:62 , GLY C:94 , THR C:95 , ASP C:96 , ALA C:120 , HOH C:2008 , HOH C:2200
BINDING SITE FOR RESIDUE SIN C 350
4
AC4
SOFTWARE
GLY D:14 , THR D:15 , ALA D:31 , ALA D:61 , SER D:62 , GLU D:63 , GLY D:94 , THR D:95 , ASP D:96 , ALA D:120 , HOH D:2225
BINDING SITE FOR RESIDUE SIN D 350
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ASPG_DICCH_001 (I156I, chain A/B/C/D, )
2: VAR_ASPG_DICCH_002 (R178R, chain A/B/C/D, )
3: VAR_ASPG_DICCH_003 (L267L, chain A/B/C/D, )
4: VAR_ASPG_DICCH_004 (M274M, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ASPG_DICCH_001
*
L
177
I
ASPG_DICCH
---
---
A/B/C/D
I
156
I
2
UniProt
VAR_ASPG_DICCH_002
*
K
199
R
ASPG_DICCH
---
---
A/B/C/D
R
178
R
3
UniProt
VAR_ASPG_DICCH_003
*
M
288
L
ASPG_DICCH
---
---
A/B/C/D
L
267
L
4
UniProt
VAR_ASPG_DICCH_004
*
I
295
M
ASPG_DICCH
---
---
A/B/C/D
M
274
M
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ASN_GLN_ASE_3 (A:5-327,B:5-327,C:5-327,D:5-327)
2: ASN_GLN_ASE_1 (A:9-17,B:9-17,C:9-17,D:9-17)
3: ASN_GLN_ASE_2 (A:88-98,B:88-98,C:88-98,D:88-98)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASN_GLN_ASE_3
PS51732
Asparaginase / glutaminase domain profile.
ASPG_DICCH
26-348
4
A:5-327
B:5-327
C:5-327
D:5-327
2
ASN_GLN_ASE_1
PS00144
Asparaginase / glutaminase active site signature 1.
ASPG_DICCH
30-38
4
A:9-17
B:9-17
C:9-17
D:9-17
3
ASN_GLN_ASE_2
PS00917
Asparaginase / glutaminase active site signature 2.
ASPG_DICCH
109-119
4
A:88-98
B:88-98
C:88-98
D:88-98
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1hg0a_ (A:)
1b: SCOP_d1hg0b_ (B:)
1c: SCOP_d1hg0c_ (C:)
1d: SCOP_d1hg0d_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Glutaminase/Asparaginase
(37)
Superfamily
:
Glutaminase/Asparaginase
(37)
Family
:
Glutaminase/Asparaginase
(33)
Protein domain
:
Asparaginase type II
(17)
Erwinia chrysanthemi [TaxId: 556]
(8)
1a
d1hg0a_
A:
1b
d1hg0b_
B:
1c
d1hg0c_
C:
1d
d1hg0d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1hg0A01 (A:3-218)
1b: CATH_1hg0C01 (C:3-218)
1c: CATH_1hg0D01 (D:3-218)
1d: CATH_1hg0B01 (B:3-218)
2a: CATH_1hg0A02 (A:219-327)
2b: CATH_1hg0C02 (C:219-327)
2c: CATH_1hg0D02 (D:219-327)
2d: CATH_1hg0B02 (B:219-327)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1170, no name defined]
(27)
Erwinia chrysanthemi. Organism_taxid: 556. Strain: ncppb 1125.
(5)
1a
1hg0A01
A:3-218
1b
1hg0C01
C:3-218
1c
1hg0D01
D:3-218
1d
1hg0B01
B:3-218
Homologous Superfamily
:
[code=3.40.50.40, no name defined]
(27)
Erwinia chrysanthemi. Organism_taxid: 556. Strain: ncppb 1125.
(5)
2a
1hg0A02
A:219-327
2b
1hg0C02
C:219-327
2c
1hg0D02
D:219-327
2d
1hg0B02
B:219-327
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Pfam Domains
(0, 0)
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all PFAM domains
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