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1HE8
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
RAS G12V - PI 3-KINASE GAMMA COMPLEX
Authors
:
M. E. Pacold, S. Suire, O. Perisic, S. Lara-Gonzalez, C. T. Davis, P. T. H E. H. Walker, L. Stephens, J. F. Eccleston, R. L. Williams
Date
:
20 Nov 00 (Deposition) - 08 Jan 01 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Kinase/Hydrolase, Complex (Phosphoinositide Kinase-Ras), Phosphoinositide 3-Kinase Gamma - H-Ras G12V Complex, Phosphatidylinositol 3-Kinase, Pi3K, Pi 3-K, Pi 3-Kinase, Second Messenger Generation, Ras Effector, H-Ras G12V, Oncogene Protein, Gmppnp, Gtp, Ras-Binding Domain, Heat Domain, Kinase-Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. E. Pacold, S. Suire, O. Perisic, S. Lara-Gonzalez, C. T. Davis, E. H. Walker, P. T. Hawkins, L. Stephens, J. F. Eccleston, R. L. William
Crystal Structure And Functional Analysis Of Ras Binding To Its Effector Phosphoinositide 3-Kinase Gamma
Cell(Cambridge, Mass. ) V. 103 931 2000
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:17 , THR B:35 , GNP B:202
BINDING SITE FOR RESIDUE MG C 1
2
AC2
SOFTWARE
LYS A:647 , ALA B:11 , VAL B:12 , GLY B:13 , VAL B:14 , GLY B:15 , LYS B:16 , SER B:17 , ALA B:18 , PHE B:28 , VAL B:29 , ASP B:30 , TYR B:32 , PRO B:34 , THR B:35 , GLY B:60 , ASN B:116 , LYS B:117 , ASP B:119 , LEU B:120 , SER B:145 , ALA B:146 , HOH B:302 , MG B:201
BINDING SITE FOR RESIDUE GNP C 2
[
close Site info
]
SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_026106 (V12A, chain B, )
02: VAR_045975 (V12C, chain B, )
03: VAR_068816 (V12D, chain B, )
04: VAR_045976 (V12E, chain B, )
05: VAR_006837 (V12S, chain B, )
06: VAR_006836 (V12V, chain B, )
07: VAR_026107 (G13C, chain B, )
08: VAR_026108 (G13D, chain B, )
09: VAR_068817 (G13R, chain B, )
10: VAR_045977 (Q22K, chain B, )
11: VAR_045978 (T58I, chain B, )
12: VAR_045979 (Q61K, chain B, )
13: VAR_006838 (Q61L, chain B, )
14: VAR_045980 (E63K, chain B, )
15: VAR_045981 (K117R, chain B, )
16: VAR_045982 (A146T, chain B, )
17: VAR_045983 (A146V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026106
G
12
A
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
A
02
UniProt
VAR_045975
G
12
C
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
C
03
UniProt
VAR_068816
G
12
D
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
D
04
UniProt
VAR_045976
G
12
E
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
E
05
UniProt
VAR_006837
G
12
S
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
S
06
UniProt
VAR_006836
G
12
V
RASH_HUMAN
Disease (CSTLO)
---
B
V
12
V
07
UniProt
VAR_026107
G
13
C
RASH_HUMAN
Disease (CSTLO)
---
B
G
13
C
08
UniProt
VAR_026108
G
13
D
RASH_HUMAN
Disease (CSTLO)
---
B
G
13
D
09
UniProt
VAR_068817
G
13
R
RASH_HUMAN
Disease (SFM)
---
B
G
13
R
10
UniProt
VAR_045977
Q
22
K
RASH_HUMAN
Disease (CMEMS)
---
B
Q
22
K
11
UniProt
VAR_045978
T
58
I
RASH_HUMAN
Disease (CSTLO)
---
B
T
58
I
12
UniProt
VAR_045979
Q
61
K
RASH_HUMAN
Unclassified
28933406
B
Q
61
K
13
UniProt
VAR_006838
Q
61
L
RASH_HUMAN
Unclassified
---
B
Q
61
L
14
UniProt
VAR_045980
E
63
K
RASH_HUMAN
Disease (CMEMS)
---
B
E
63
K
15
UniProt
VAR_045981
K
117
R
RASH_HUMAN
Disease (CSTLO)
---
B
K
117
R
16
UniProt
VAR_045982
A
146
T
RASH_HUMAN
Disease (CSTLO)
---
B
A
146
T
17
UniProt
VAR_045983
A
146
V
RASH_HUMAN
Disease (CSTLO)
---
B
A
146
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(7, 7)
Info
All PROSITE Patterns/Profiles
1: RAS (B:1-166,B:1-166)
2: PI3K_RBD (A:217-309)
3: PI3K_C2 (A:357-521)
4: PIK_HELICAL (A:620-723)
5: PI3_4_KINASE_3 (A:828-1073)
6: PI3_4_KINASE_1 (A:832-846)
7: PI3_4_KINASE_2 (A:931-951)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RASH_HUMAN
1-188
1
B:1-166
RASH_MSVNS
1-188
1
B:1-166
2
PI3K_RBD
PS51546
Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.
PK3CG_HUMAN
217-309
1
A:217-309
3
PI3K_C2
PS51547
Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.
PK3CG_HUMAN
357-521
1
A:357-521
4
PIK_HELICAL
PS51545
PIK helical domain profile.
PK3CG_HUMAN
541-723
1
A:620-723
5
PI3_4_KINASE_3
PS50290
Phosphatidylinositol 3- and 4-kinases family profile.
PK3CG_HUMAN
828-1073
1
A:828-1073
6
PI3_4_KINASE_1
PS00915
Phosphatidylinositol 3- and 4-kinases signature 1.
PK3CG_HUMAN
832-846
1
A:832-846
7
PI3_4_KINASE_2
PS00916
Phosphatidylinositol 3- and 4-kinases signature 2.
PK3CG_HUMAN
931-951
1
A:931-951
[
close PROSITE info
]
Exons
(10, 10)
Info
All Exons
Exon 1.3 (A:144-665 (gaps))
Exon 1.4 (A:666-687)
Exon 1.5 (A:688-763 (gaps))
Exon 1.6 (A:763-797)
Exon 1.7 (A:798-846)
Exon 1.8a (A:847-877)
Exon 1.10b (A:877-920 (gaps))
Exon 1.11 (A:921-958)
Exon 1.12 (A:958-1010 (gaps))
Exon 1.13c (A:1011-1084 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8a
07: Boundary 1.8a/1.10b
08: Boundary 1.10b/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13c
11: Boundary 1.13c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000359195
2
ENSE00001516038
chr7:
106505924-106506221
298
PK3CG_HUMAN
-
0
0
-
-
1.3
ENST00000359195
3
ENSE00000881746
chr7:
106507995-106510001
2007
PK3CG_HUMAN
1-665
665
1
A:144-665 (gaps)
523
1.4
ENST00000359195
4
ENSE00001209548
chr7:
106512982-106513047
66
PK3CG_HUMAN
666-687
22
1
A:666-687
22
1.5
ENST00000359195
5
ENSE00001209547
chr7:
106513158-106513383
226
PK3CG_HUMAN
688-763
76
1
A:688-763 (gaps)
76
1.6
ENST00000359195
6
ENSE00001209556
chr7:
106515145-106515248
104
PK3CG_HUMAN
763-797
35
1
A:763-797
35
1.7
ENST00000359195
7
ENSE00001274495
chr7:
106519964-106520110
147
PK3CG_HUMAN
798-846
49
1
A:798-846
49
1.8a
ENST00000359195
8a
ENSE00001274489
chr7:
106522562-106522652
91
PK3CG_HUMAN
847-877
31
1
A:847-877
31
1.10b
ENST00000359195
10b
ENSE00000715047
chr7:
106523478-106523608
131
PK3CG_HUMAN
877-920
44
1
A:877-920 (gaps)
44
1.11
ENST00000359195
11
ENSE00000715048
chr7:
106524600-106524711
112
PK3CG_HUMAN
921-958
38
1
A:921-958
38
1.12
ENST00000359195
12
ENSE00000715049
chr7:
106526580-106526737
158
PK3CG_HUMAN
958-1010
53
1
A:958-1010 (gaps)
53
1.13c
ENST00000359195
13c
ENSE00001838951
chr7:
106545554-106547590
2037
PK3CG_HUMAN
1011-1102
92
1
A:1011-1084 (gaps)
74
[
close EXON info
]
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1he8a1 (A:525-725)
2a: SCOP_d1he8a2 (A:353-524)
3a: SCOP_d1he8a3 (A:144-321)
4a: SCOP_d1he8a4 (A:726-1084)
5a: SCOP_d1he8b_ (B:)
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Classes
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Folds
(
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(
)
(
)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Phoshoinositide 3-kinase (PI3K) helical domain
(56)
Protein domain
:
Phoshoinositide 3-kinase (PI3K) helical domain
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
1a
d1he8a1
A:525-725
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
Phoshoinositide 3-kinase (PI3K)
(55)
Human (Homo sapiens) [TaxId: 9606]
(50)
2a
d1he8a2
A:353-524
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ras-binding domain, RBD
(83)
Protein domain
:
Phoshoinositide 3-kinase (PI3K)
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
3a
d1he8a3
A:144-321
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Phoshoinositide 3-kinase (PI3K), catalytic domain
(56)
Protein domain
:
Phoshoinositide 3-kinase (PI3K), catalytic domain
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
4a
d1he8a4
A:726-1084
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
cH-p21 Ras protein
(104)
Human (Homo sapiens) [TaxId: 9606]
(104)
5a
d1he8b_
B:
[
close SCOP info
]
CATH Domains
(6, 6)
Info
all CATH domains
1a: CATH_1he8A04 (A:726-883)
2a: CATH_1he8B00 (B:1-166)
3a: CATH_1he8A01 (A:144-321)
4a: CATH_1he8A03 (A:523-725)
5a: CATH_1he8A05 (A:884-1075)
6a: CATH_1he8A02 (A:357-522)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4
(25)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4
(25)
Human (Homo sapiens)
(19)
1a
1he8A04
A:726-883
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
2a
1he8B00
B:1-166
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
3a
1he8A01
A:144-321
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.70, no name defined]
(25)
Human (Homo sapiens)
(19)
4a
1he8A03
A:523-725
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5
(25)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 5
(25)
Human (Homo sapiens)
(19)
5a
1he8A05
A:884-1075
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
6a
1he8A02
A:357-522
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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