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1HE5
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (40 KB)
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(1)
Title
:
HUMAN BILIVERDIN IX BETA REDUCTASE: NADP/LUMICHROME TERNARY COMPLEX
Authors
:
P. J. B. Pereira, S. Macedo-Ribeiro, A. Parraga, R. Perez-Luque, O. Cunningham, K. Darcy, T. J. Mantle, M. Coll
Date
:
19 Nov 00 (Deposition) - 28 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Biliverdin-Ix Beta Reductase, Foetal Metabolism, Haem Degradation, Flavin Reductase, Diaphorase, Green Haem Binding Protein, Methaemoglobin Reductase, Alpha/Beta Dinucleotide Binding Fold
(Keyword Search:
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Reference
:
P. J. B. Pereira, S. Macedo-Ribeiro, A. Parraga, R. Perez-Luque, O. Cunningham, K. Darcy, T. J. Mantle, M. Coll
Structure Of Human Biliverdin Ix Beta Reductase, An Early Fetal Bilirubin Ix Producing Enzyme
Nat. Struct. Biol. V. 8 215 2001
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: LUMICHROME (LUMa)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LUM
1
Ligand/Ion
LUMICHROME
2
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:10 , THR A:12 , GLY A:13 , GLN A:14 , THR A:15 , ARG A:35 , ARG A:39 , ASP A:54 , VAL A:55 , LEU A:74 , LEU A:75 , GLY A:76 , ARG A:78 , MET A:87 , CYS A:109 , THR A:110 , SER A:111 , HIS A:132 , PRO A:151 , PRO A:152 , HIS A:153 , ILE A:154 , LUM A:1207 , HOH A:2028 , HOH A:2065 , HOH A:2262 , HOH A:2263 , HOH A:2264 , HOH A:2265 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2269 , HOH A:2270
BINDING SITE FOR RESIDUE NAP A1206
2
AC2
SOFTWARE
SER A:111 , ALA A:112 , PHE A:113 , TRP A:116 , VAL A:128 , HIS A:132 , PRO A:151 , PRO A:152 , HIS A:153 , NAP A:1206 , HOH A:2271
BINDING SITE FOR RESIDUE LUM A1207
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019168 (R46Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019168
R
46
Q
BLVRB_HUMAN
Polymorphism
11547746
A
R
46
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:1-27)
Exon 1.2 (A:27-82)
Exon 1.3 (A:82-112)
Exon 1.4 (A:112-155)
Exon 1.5 (A:155-205)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263368
1
ENSE00001504331
chr19:
40971725-40971517
209
BLVRB_HUMAN
1-27
27
1
A:1-27
27
1.2
ENST00000263368
2
ENSE00001504330
chr19:
40964452-40964288
165
BLVRB_HUMAN
27-82
56
1
A:27-82
56
1.3
ENST00000263368
3
ENSE00000706810
chr19:
40964151-40964062
90
BLVRB_HUMAN
82-112
31
1
A:82-112
31
1.4
ENST00000263368
4
ENSE00000706793
chr19:
40957399-40957271
129
BLVRB_HUMAN
112-155
44
1
A:112-155
44
1.5
ENST00000263368
5
ENSE00001139369
chr19:
40953953-40953693
261
BLVRB_HUMAN
155-206
52
1
A:155-205
51
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1he5a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Biliverdin IX beta reductase
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1he5a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1he5A00 (A:1-205)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1he5A00
A:1-205
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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