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1HDG
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA AT 2.5 ANGSTROMS RESOLUTION
Authors
:
I. Korndoerfer, B. Steipe, R. Huber, A. Tomschy, R. Jaenicke
Date
:
17 Jan 95 (Deposition) - 31 Mar 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : O,Q
Biol. Unit 1: O,Q (2x)
Keywords
:
Oxidoreductase (Aldehy(D)-Nad(A))
(Keyword Search:
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Reference
:
I. Korndorfer, B. Steipe, R. Huber, A. Tomschy, R. Jaenicke
The Crystal Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2. 5 A Resolution.
J. Mol. Biol. V. 246 511 1995
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR O:179 , ARG O:195 , ARG O:231 , NAD O:336 , HOH O:347 , HOH O:361
BINDING SITE FOR RESIDUE SO4 O 338
2
AC2
SOFTWARE
SER O:148 , CYS O:149 , THR O:150 , HIS O:176 , THR O:208 , GLY O:209 , HOH O:361 , HOH O:362 , HOH O:363 , HOH O:364
BINDING SITE FOR RESIDUE SO4 O 339
3
AC3
SOFTWARE
THR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , NAD Q:336 , HOH Q:346 , HOH Q:353 , HOH Q:430
BINDING SITE FOR RESIDUE SO4 Q 338
4
AC4
SOFTWARE
SER Q:148 , CYS Q:149 , THR Q:150 , HIS Q:176 , THR Q:208 , GLY Q:209 , HOH Q:350 , HOH Q:353 , HOH Q:354 , HOH Q:430
BINDING SITE FOR RESIDUE SO4 Q 339
5
AC5
SOFTWARE
GLY O:7 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:32 , LEU O:33 , PRO O:77 , SER O:95 , THR O:96 , GLY O:97 , THR O:119 , ALA O:120 , ASN O:180 , ASN O:313 , TYR O:317 , SO4 O:338 , HOH O:345 , HOH O:346 , HOH O:347 , HOH O:348 , HOH O:351 , HOH O:366 , HOH O:369 , HOH O:422 , HOH O:423 , HOH O:424 , HOH O:426 , HOH Q:411
BINDING SITE FOR RESIDUE NAD O 336
6
AC6
SOFTWARE
GLY Q:7 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , ASP Q:32 , LEU Q:33 , PRO Q:77 , SER Q:95 , THR Q:96 , GLY Q:97 , PHE Q:99 , THR Q:119 , ALA Q:120 , ASN Q:180 , ASN Q:313 , TYR Q:317 , SO4 Q:338 , HOH Q:341 , HOH Q:342 , HOH Q:343 , HOH Q:345 , HOH Q:346 , HOH Q:347 , HOH Q:348 , HOH Q:350 , HOH Q:351 , HOH Q:363 , HOH Q:366 , HOH Q:367
BINDING SITE FOR RESIDUE NAD Q 336
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GAPDH (O:147-154,Q:147-154)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3P_THEMA
150-157
2
O:147-154
Q:147-154
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hdgo2 (O:149-312)
1b: SCOP_d1hdgq2 (Q:149-312)
2a: SCOP_d1hdgo1 (O:1-148,O:313-331)
2b: SCOP_d1hdgq1 (Q:1-148,Q:313-331)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1hdgo2
O:149-312
1b
d1hdgq2
Q:149-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1hdgo1
O:1-148,O:313-331
2b
d1hdgq1
Q:1-148,Q:313-331
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1hdgO02 (O:148-313)
1b: CATH_1hdgQ02 (Q:148-313)
2a: CATH_1hdgO01 (O:1-147,O:314-331)
2b: CATH_1hdgQ01 (Q:1-147,Q:314-331)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Thermotoga maritima. Organism_taxid: 2336.
(4)
1a
1hdgO02
O:148-313
1b
1hdgQ02
Q:148-313
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thermotoga maritima. Organism_taxid: 2336.
(10)
2a
1hdgO01
O:1-147,O:314-331
2b
1hdgQ01
Q:1-147,Q:314-331
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (115 KB)
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