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Getting 'Biological Unit' information from database.
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1HDA
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (93 KB)
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Title
:
A NOVEL ALLOSTERIC MECHANISM IN HAEMOGLOBIN. STRUCTURE OF BOVINE DEOXYHAEMOGLOBIN, ABSENCE OF SPECIFIC CHLORIDE-BINDING SITES AND ORIGIN OF THE CHLORIDE-LINKED BOHR EFFECT IN BOVINE AND HUMAN HAEMOGLOBIN
Authors
:
G. Fermi
Date
:
06 May 93 (Deposition) - 31 May 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxygen Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. F. Perutz, G. Fermi, C. Poyart, J. Pagnier, J. Kister
A Novel Allosteric Mechanism In Haemoglobin. Structure Of Bovine Deoxyhaemoglobin, Absence Of Specific Chloride-Binding Sites And Origin Of The Chloride-Linked Bohr Effect In Bovine And Human Haemoglobin.
J. Mol. Biol. V. 233 536 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: A1 (UNKNOWN)
2: AC1 (SOFTWARE)
3: AC2 (SOFTWARE)
4: AC3 (SOFTWARE)
5: AC4 (SOFTWARE)
6: B1 (UNKNOWN)
7: C1 (UNKNOWN)
8: D1 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
A1
UNKNOWN
HIS A:87
NULL
2
AC1
SOFTWARE
TYR A:42 , PHE A:43 , HIS A:58 , LYS A:61 , LEU A:86 , HIS A:87 , LEU A:91 , VAL A:93 , ASN A:97 , PHE A:98 , LEU A:101 , LEU A:136 , HOH A:762 , HOH A:765 , LYS C:61
BINDING SITE FOR RESIDUE HEM A 143
3
AC2
SOFTWARE
HIS A:72 , ASP A:75 , HOH A:772 , PHE B:42 , HIS B:63 , LYS B:66 , VAL B:67 , SER B:70 , HIS B:92 , LEU B:96 , ASN B:102 , PHE B:103 , LEU B:106 , LEU B:141
BINDING SITE FOR RESIDUE HEM B 148
4
AC3
SOFTWARE
HIS A:45 , TYR C:42 , PHE C:43 , HIS C:45 , HIS C:58 , LYS C:61 , LEU C:83 , HIS C:87 , LEU C:91 , VAL C:93 , ASN C:97 , PHE C:98 , LEU C:101 , LEU C:136 , HOH C:761 , HOH C:774
BINDING SITE FOR RESIDUE HEM C 143
5
AC4
SOFTWARE
LYS B:8 , PHE D:42 , HIS D:63 , VAL D:67 , SER D:70 , HIS D:92 , LEU D:96 , ASN D:102 , PHE D:103 , LEU D:141
BINDING SITE FOR RESIDUE HEM D 148
6
B1
UNKNOWN
HIS B:92
NULL
7
C1
UNKNOWN
HIS C:87
NULL
8
D1
UNKNOWN
HIS D:92
NULL
[
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]
SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HBB_BOVIN_001 (G16S, chain B/D, )
2: VAR_HBB_BOVIN_002 (K19H, chain B/D, )
3: VAR_HBB_BOVIN_003 (D21G, chain B/D, )
4: VAR_HBB_BOVIN_004 (S44T, chain B/D, )
5: VAR_HBA_BOVIN_001 (H89Y, chain A/C, )
6: VAR_HBB_BOVIN_005 (K120N, chain B/D, )
7: VAR_HBA_BOVIN_002 (N131S, chain A/C, )
8: VAR_HBB_BOVIN_006 (K132Q, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HBB_BOVIN_001
*
G
15
S
HBB_BOVIN
---
---
B/D
G
16
S
2
UniProt
VAR_HBB_BOVIN_002
*
K
18
H
HBB_BOVIN
---
---
B/D
K
19
H
3
UniProt
VAR_HBB_BOVIN_003
*
D
20
G
HBB_BOVIN
---
---
B/D
D
21
G
4
UniProt
VAR_HBB_BOVIN_004
*
S
43
T
HBB_BOVIN
---
---
B/D
S
44
T
5
UniProt
VAR_HBA_BOVIN_001
*
H
90
Y
HBA_BOVIN
---
---
A/C
H
89
Y
6
UniProt
VAR_HBB_BOVIN_005
*
K
119
N
HBB_BOVIN
---
---
B/D
K
120
N
7
UniProt
VAR_HBA_BOVIN_002
*
N
132
S
HBA_BOVIN
---
---
A/C
N
131
S
8
UniProt
VAR_HBB_BOVIN_006
*
K
131
Q
HBB_BOVIN
---
---
B/D
K
132
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:3-146,D:3-146,A:2-141,C:2-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBB_BOVIN
2-145
2
B:3-146
D:3-146
HBA_BOVIN
3-142
2
A:2-141
C:2-141
[
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]
Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:1-31 | C:1-31)
Exon 1.2 (A:31-99 | C:31-99)
Exon 1.3 (A:100-141 | C:100-141)
Exon 2.1 (B:2-30 | D:2-30)
Exon 2.2 (B:30-104 | D:30-104)
Exon 2.3 (B:105-146 | D:105-146)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
5: Boundary -/2.1
6: Boundary 2.1/2.2
7: Boundary 2.2/2.3
8: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000037545
1
ENSBTAE00000380516
chr25:
669652-669785
134
HBA_BOVIN
1-32
32
2
A:1-31
C:1-31
31
31
1.2
ENSBTAT00000037545
2
ENSBTAE00000412716
chr25:
669887-670091
205
HBA_BOVIN
32-100
69
2
A:31-99
C:31-99
69
69
1.3
ENSBTAT00000037545
3
ENSBTAE00000409296
chr25:
670196-670419
224
HBA_BOVIN
101-142
42
2
A:100-141
C:100-141
42
42
2.1
ENSBTAT00000045694
1
ENSBTAE00000377266
chr15:
47825662-47825799
138
HBB_BOVIN
1-29
29
2
B:2-30
D:2-30
29
29
2.2
ENSBTAT00000045694
2
ENSBTAE00000383380
chr15:
47825928-47826150
223
HBB_BOVIN
29-103
75
2
B:30-104
D:30-104
75
75
2.3
ENSBTAT00000045694
3
ENSBTAE00000339283
chr15:
47827051-47827179
129
HBB_BOVIN
104-145
42
2
B:105-146
D:105-146
42
42
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1hdaa_ (A:)
1b: SCOP_d1hdac_ (C:)
2a: SCOP_d1hdab_ (B:)
2b: SCOP_d1hdad_ (D:)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d1hdaa_
A:
1b
d1hdac_
C:
Protein domain
:
Hemoglobin, beta-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d1hdab_
B:
2b
d1hdad_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1hdaB00 (B:2-146)
1b: CATH_1hdaA00 (A:1-141)
1c: CATH_1hdaC00 (C:1-141)
1d: CATH_1hdaD00 (D:2-146)
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Cattle (Bos taurus)
(6)
1a
1hdaB00
B:2-146
1b
1hdaA00
A:1-141
1c
1hdaC00
C:1-141
1d
1hdaD00
D:2-146
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
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