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1HD4
Asym. Unit
Info
Asym.Unit (709 KB)
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Models
(26 )
Title
:
SOLUTION STRUCTURE OF THE A-SUBUNIT OF HUMAN CHORIONIC GONADOTROPIN [MODELED WITH DIANTENNARY GLYCAN AT ASN78]
Authors
:
P. J. A. Erbel, Y. Karimi-Nejad, J. A. Van Kuik, R. Boelens, J. P. Kamerling, J. F. G. Vliegenthart
Date
:
07 Nov 00 (Deposition) - 07 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (26 x)
Keywords
:
Hcg, Glycoprotein, Chorionic Gonadotropin, Glycoprotein Structure, Nmr, Xplor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. J. A. Erbel, Y. Karimi-Nejad, J. A. Van Kuik, R. Boelens, J. P. Kamerling, J. F. G. Vliegenthart
Effects Of The N-Linked Glycans On The 3D Structure Of The Free A-Subunit Of Human Chorionic Gonadotropin
Biochemistry V. 39 6012 2000
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:23 , ILE A:25 , ASN A:66 , ASN A:78 , HIS A:79 , THR A:80 , NAG A:179
BINDING SITE FOR RESIDUE NAG A 178
2
AC2
SOFTWARE
NAG A:178 , BMA A:180
BINDING SITE FOR RESIDUE NAG A 179
3
AC3
SOFTWARE
NAG A:179 , MAN A:181 , MAN A:182
BINDING SITE FOR RESIDUE BMA A 180
4
AC4
SOFTWARE
BMA A:180 , NAG A:184
BINDING SITE FOR RESIDUE MAN A 181
5
AC5
SOFTWARE
BMA A:180 , NAG A:183
BINDING SITE FOR RESIDUE MAN A 182
6
AC6
SOFTWARE
MAN A:182 , GAL A:186
BINDING SITE FOR RESIDUE NAG A 183
7
AC7
SOFTWARE
MAN A:181 , GAL A:185
BINDING SITE FOR RESIDUE NAG A 184
8
AC8
SOFTWARE
NAG A:184
BINDING SITE FOR RESIDUE GAL A 185
9
AC9
SOFTWARE
NAG A:183
BINDING SITE FOR RESIDUE GAL A 186
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: GLYCO_HORMONE_ALPHA_3 (A:7-92)
2: GLYCO_HORMONE_ALPHA_1 (A:28-40)
3: GLYCO_HORMONE_ALPHA_2 (A:78-91)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCO_HORMONE_ALPHA_3
PS50277
Glycoprotein hormones alpha chain family profile.
GLHA_HUMAN
31-116
1
A:7-92
2
GLYCO_HORMONE_ALPHA_1
PS00779
Glycoprotein hormones alpha chain signature 1.
GLHA_HUMAN
52-64
1
A:28-40
3
GLYCO_HORMONE_ALPHA_2
PS00780
Glycoprotein hormones alpha chain signature 2.
GLHA_HUMAN
102-115
1
A:78-91
[
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:1-6)
Exon 1.3 (A:6-67)
Exon 1.4 (A:68-92)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000369582
1
ENSE00001450387
chr6:
87804824-87804731
94
GLHA_HUMAN
-
0
0
-
-
1.2
ENST00000369582
2
ENSE00000798150
chr6:
87797925-87797831
95
GLHA_HUMAN
1-30
30
1
A:1-6
6
1.3
ENST00000369582
3
ENSE00000798149
chr6:
87796152-87795968
185
GLHA_HUMAN
30-91
62
1
A:6-67
62
1.4
ENST00000369582
4
ENSE00000798148
chr6:
87795551-87795216
336
GLHA_HUMAN
92-116
25
1
A:68-92
25
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hd4a_ (A:)
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Classes
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)
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Folds
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Superfamilies
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Gonadodropin/Follitropin
(16)
Protein domain
:
Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1hd4a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hd4A00 (A:1-92)
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Organisms
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)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
1hd4A00
A:1-92
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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