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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
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Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
HUMAN PEROXIREDOXIN 5
Authors
:
J. P. Declercq, C. Evrard
Date
:
06 Nov 00 (Deposition) - 28 Aug 01 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Antioxidant Enzyme, Peroxiredoxin, Thioredoxin Peroxidase, Thioredoxin Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Declercq, C. Evrard, A. Clippe, D. V. Stricht, A. Bernard, B. Knoops
Crystal Structure Of Human Peroxiredoxin 5, A Novel Type Of Mammalian Peroxiredoxin At 1. 5 A Resolution.
J. Mol. Biol. V. 311 751 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BENZOIC ACID (BEZa)
2a: BROMIDE ION (BRa)
2b: BROMIDE ION (BRb)
2c: BROMIDE ION (BRc)
2d: BROMIDE ION (BRd)
2e: BROMIDE ION (BRe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEZ
1
Ligand/Ion
BENZOIC ACID
2
BR
5
Ligand/Ion
BROMIDE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:63 , LYS A:93 , SER A:118
BINDING SITE FOR RESIDUE BR A 301
2
AC2
SOFTWARE
GLN A:133 , LEU A:149
BINDING SITE FOR RESIDUE BR A 303
3
AC3
SOFTWARE
ALA A:90 , GLU A:91
BINDING SITE FOR RESIDUE BR A 304
4
AC4
SOFTWARE
GLN A:68 , ASP A:113 , SER A:115
BINDING SITE FOR RESIDUE BR A 305
5
AC5
SOFTWARE
PRO A:40 , THR A:44 , PRO A:45 , GLY A:46 , CYS A:47 , LYS A:63 , ALA A:64 , GLY A:66 , ARG A:127 , THR A:147 , HOH A:2113
BINDING SITE FOR RESIDUE BEZ A 201
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036406 (F104L, chain A, )
2: VAR_PRDX5_HUMAN_CCDS8069_1_01 (F104L, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036406
F
157
L
PRDX5_HUMAN
Unclassified
---
A
F
104
L
2
CancerSNP
VAR_PRDX5_HUMAN_CCDS8069_1_01
*
F
157
L
PRDX5_HUMAN
Disease (Breast cancer)
---
A
F
104
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:3-161)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX5_HUMAN
56-214
1
A:3-161
[
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Exons
(6, 6)
Info
All Exons
Exon 1.1 (A:1-4)
Exon 1.2 (A:5-49)
Exon 1.3 (A:50-93)
Exon 1.4 (A:94-106)
Exon 1.5 (A:107-127)
Exon 1.6 (A:127-161)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000265462
1
ENSE00001265861
chr11:
64085569-64085858
290
PRDX5_HUMAN
1-57
57
1
A:1-4
4
1.2
ENST00000265462
2
ENSE00001317366
chr11:
64087206-64087340
135
PRDX5_HUMAN
58-102
45
1
A:5-49
45
1.3
ENST00000265462
3
ENSE00001291509
chr11:
64088133-64088264
132
PRDX5_HUMAN
103-146
44
1
A:50-93
44
1.4
ENST00000265462
4
ENSE00001313724
chr11:
64088337-64088375
39
PRDX5_HUMAN
147-159
13
1
A:94-106
13
1.5
ENST00000265462
5
ENSE00000992394
chr11:
64088479-64088540
62
PRDX5_HUMAN
160-180
21
1
A:107-127
21
1.6
ENST00000265462
6
ENSE00001195244
chr11:
64089058-64089282
225
PRDX5_HUMAN
180-214
35
1
A:127-161
35
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hd2a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Peroxiredoxin 5
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1hd2a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hd2A00 (A:1-161)
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(
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1hd2A00
A:1-161
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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