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Asym. Unit
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Asym.Unit (26 KB)
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(1)
Title
:
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR
Authors
:
T. Nagata, Y. Kurihara, G. Matsuda, J. Saeki, T. Kohno, Y. Yanagida, F. Ishikawa, S. Uesugi, M. Katahira
Date
:
18 May 99 (Deposition) - 18 May 00 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Rna-Binding Domain, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Nagata, Y. Kurihara, G. Matsuda, J. Saeki, T. Kohno, Y. Yanagida, F. Ishikawa, S. Uesugi, M. Katahira
Structure And Interactions With Rna Of The N-Terminal Uuag-Specific Rna-Binding Domain Of Hnrnp D0.
J. Mol. Biol. V. 287 221 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(2, 2)
Info
All Exons
Exon 1.6b (A:98-153)
Exon 1.7c (A:154-172)
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All Exon Boundaries
1: Boundary 1.5/1.6b
2: Boundary 1.6b/1.7c
3: Boundary 1.7c/1.7f
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3e
ENST00000313899
3e
ENSE00001843674
chr4:
83295109-83294599
511
HNRPD_HUMAN
1-78
78
0
-
-
1.5
ENST00000313899
5
ENSE00001181831
chr4:
83292737-83292681
57
HNRPD_HUMAN
78-97
20
0
-
-
1.6b
ENST00000313899
6b
ENSE00001251874
chr4:
83280792-83280624
169
HNRPD_HUMAN
97-153
57
1
A:98-153
56
1.7c
ENST00000313899
7c
ENSE00001181862
chr4:
83279973-83279812
162
HNRPD_HUMAN
154-207
54
1
A:154-172
19
1.7f
ENST00000313899
7f
ENSE00001251906
chr4:
83278597-83278466
132
HNRPD_HUMAN
208-251
44
0
-
-
1.8a
ENST00000313899
8a
ENSE00001340965
chr4:
83278048-83277949
100
HNRPD_HUMAN
252-285
34
0
-
-
1.8d
ENST00000313899
8d
ENSE00001127181
chr4:
83277836-83277690
147
HNRPD_HUMAN
285-334
50
0
-
-
1.8e
ENST00000313899
8e
ENSE00001251846
chr4:
83276554-83276457
98
HNRPD_HUMAN
334-355
22
0
-
-
1.8k
ENST00000313899
8k
ENSE00002072421
chr4:
83275307-83273651
1657
HNRPD_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1hd0a_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Heterogeneous nuclear ribonucleoprotein d0
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1hd0a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1hd0A00 (A:98-172)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1hd0A00
A:98-172
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Pfam Domains
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Chain A
Asymmetric Unit 1
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